PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021294999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 19771 Da PI: 4.4966 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.6 | 6.8e-23 | 26 | 72 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 + e++s+rqvtfskRr+g++KKA E+S+LC+aeva++ +s++g++y+ XP_021294999.1 26 KLEDESKRQVTFSKRRKGLFKKATEVSTLCGAEVAILALSKSGRVYT 72 6799*****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MDSASNTTDA TTTKKSRGRQ RIEIKKLEDE SKRQVTFSKR RKGLFKKATE VSTLCGAEVA 60 ILALSKSGRV YTTDGVDAVL DRYLADSSDS NPLPKQKEVE EDNAGFWWDQ PIENLTLVEL 120 VEYTMALNDL RETAAARLEE LNIQNSTYLW PFVADEDVNE ADIVHQFMVE RNYD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 4e-31 | M-type_MADS family protein |