PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G72350.1 | ||||||||
Common Name | T10D10.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25513.1 Da PI: 9.355 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.5 | 2.7e-21 | 53 | 98 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++rqvtfskRr g++KKA ELSvLC+a++ +i fs +++y + AT1G72350.1 53 MLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSF 98 5579***********************************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.02 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-26 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-23 | 43 | 111 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.01E-30 | 43 | 109 | No hit | No description |
PRINTS | PR00404 | 1.0E-19 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-21 | 55 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-19 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEDGEASTIT FLPTTEPKPL QNPNLLAKPK KETKQKKPKT TKGRQKIEIK EIMLETRRQV 60 TFSKRRSGLF KKAAELSVLC GAQIGIITFS RCDRIYSFGN VNSLIDKYLR KAPVMLRSHP 120 GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP 180 AFPNEMAMAD WKLTNENLMA RNDRGYGGNN GDLEFAFMPQ NGRQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18410060 | 0.0 | ||||
Genevisible | 260452_at | 0.0 | ||||
Expression Atlas | AT1G72350 | - | ||||
AtGenExpress | AT1G72350 | - | ||||
ATTED-II | AT1G72350 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G72350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G72350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016529 | 0.0 | AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence. | |||
GenBank | AY141235 | 0.0 | AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds. | |||
GenBank | BT025647 | 0.0 | BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446421 | 0.0 | DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177379.1 | 1e-167 | MADS-box transcription factor family protein | ||||
TrEMBL | A0A178WJB6 | 1e-166 | A0A178WJB6_ARATH; Uncharacterized protein | ||||
TrEMBL | Q9C9D4 | 1e-166 | Q9C9D4_ARATH; At1g72350 | ||||
STRING | AT1G72350.1 | 1e-167 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT1G72350.1 |
Entrez Gene | 843567 |
iHOP | AT1G72350 |
wikigenes | AT1G72350 |