PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294995.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 405aa MW: 45925.9 Da PI: 4.8404

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.9	1e-35	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +ll++ XP_021294995.1 14 FLTKTYEMVDDPSTDSVVSWSASNKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFIRGQPHLLKN 99 9******************999************************************9998.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_021294995.1 100 IHRRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MDDAQGSSSS LPPFLTKTYE MVDDPSTDSV VSWSASNKSF IVWNPPEFAR DLLPRFFKHN 60 NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MQNLLGQGAS 120 QLTESERQNF RDDIERLKTE KESLVLELKR HEQERQGFEM QMRLLRERLQ NLERRQQIMV 180 SSVAQVLQKP GLAINLTPQL EANDRKRRLP RIAYLYDEAG IEDNQIGSSQ IARENADSTS 240 LSNMEPFEQL ESSMVFWENV VHDFGQTNIQ LNSNVELDES TSCAESPAIS GMQLNVDAQH 300 KSPGIDMNSE PATVAASEPV TANEEAAVTT APATAPAGAN DVFWEQFLTE NPGSTDMQEV 360 QSERKDSDAR KSDSKPGDHG RFCWNMKNVN NLAEKMGHLT PAERT

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MDDAQGSSSS LPPFLTKTYE MVDDPSTDSV VSWSASNKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MQNLLGQGAS  120
QLTESERQNF RDDIERLKTE KESLVLELKR HEQERQGFEM QMRLLRERLQ NLERRQQIMV  180
SSVAQVLQKP GLAINLTPQL EANDRKRRLP RIAYLYDEAG IEDNQIGSSQ IARENADSTS  240
LSNMEPFEQL ESSMVFWENV VHDFGQTNIQ LNSNVELDES TSCAESPAIS GMQLNVDAQH  300
KSPGIDMNSE PATVAASEPV TANEEAAVTT APATAPAGAN DVFWEQFLTE NPGSTDMQEV  360
QSERKDSDAR KSDSKPGDHG RFCWNMKNVN NLAEKMGHLT PAERT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	DRKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-124	HSF family protein