PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294357.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 356aa    MW: 38410.8 Da    PI: 6.9672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-13112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
   XP_021294357.1 112 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKY 156
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPT RGGGGNGGVG GGVKLFGVRL TDGSIIKKSA SMGNLSSAHY  60
HSSSSAAASP NPDSPLSDHV HDPNHVPDGY LSDDPAAHAS TNRRGERKKG VPWTEEEHRL  120
FLIGLQKLGK GDWRGIARNF VMSRTPTQVA SHAQKYFIRQ SNVTRRKRRS SLFDMVPDDM  180
ATDTPPVPED QVLLPSSQVE EADNANSIPS LNLSLNSEFE HGEAASQETA QETAETMMGT  240
SEFTPVVHGF FPPYLPVPYP FWALNPAPRH EEKGVEASQH QVLKPIPLLP KEPVNLDELV  300
GMSQLSIGET ETGHREPSPL SLKLLGEPSR QSAFHANAPV GGTDLSKGKT GAIQAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-91MYB_related family protein