PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G16350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 387aa MW: 41190.6 Da PI: 9.1979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky AT3G16350.1 138 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 182 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.581 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-17 | 133 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.1E-18 | 134 | 185 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-10 | 135 | 185 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-11 | 137 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-11 | 138 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.34E-9 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MTRRCSHCSN NGHNSRTCPT RGGGTCGGSG GGGGGGGGGG SGSSSAVKLF GVRLTDGSII 60 KKSASMGNLS ALAVAAAAAT HHRLSPSSPL ATSNLNDSPL SDHARYSNLH HNEGYLSDDP 120 AHGSGSSHRR GERKRGVPWT EEEHRLFLVG LQKLGKGDWR GISRNYVTSR TPTQVASHAQ 180 KYFIRHTSSS RRKRRSSLFD MVTDEMVTDS SPTQEEQTLN GSSPSKEPEK KSYLPSLELS 240 LNNTTEAEEV VATAPRQEKS QEAIEPSNGV SPMLVPGGFF PPCFPVTYTI WLPASLHGTE 300 HALNAETSSQ QHQVLKPKPG FAKERVNMDE LVGMSQLSIG MATRHETETS PSPLSLRLEP 360 SRPSAFHSNG SVNGADLSKG NSAIQAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 40 | SGGGGGGGGGGGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.47678 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42564254 | 0.0 | ||||
Genevisible | 259379_at | 0.0 | ||||
Expression Atlas | AT3G16350 | - | ||||
AtGenExpress | AT3G16350 | - | ||||
ATTED-II | AT3G16350 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G16350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | auxin, ethylene, gibberellin, jasmonic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G16350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT005832 | 0.0 | BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188256.1 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | A0A384KSV5 | 0.0 | A0A384KSV5_ARATH; Uncharacterized protein | ||||
TrEMBL | Q84TG2 | 0.0 | Q84TG2_ARATH; At3g16350 | ||||
STRING | AT3G16350.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9313 | 27 | 35 | Representative plant | OGRP394 | 16 | 99 |
Link Out ? help Back to Top | |
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Phytozome | AT3G16350.1 |
Entrez Gene | 820882 |
iHOP | AT3G16350 |
wikigenes | AT3G16350 |