PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293525.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Nin-like

Protein Properties

Length: 360aa MW: 40609.8 Da PI: 6.1306

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.3	5.6e-27	269	318	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + +++l+d++kyF+lpi++AA++L++++TvLK+iCR+yG+ RWPhRki+s XP_021293525.1 269 TRNLTLKDIEKYFHLPIEEAARSLDLSVTVLKKICRRYGVLRWPHRKIQS 318 689*********************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEDPNSSVPN NNPNDMHPDA IFNFLDFENQ VEDLTTQDIS MLSAFSIHDP SNEEIANDSI 60 DPLDDPVIWD FYNEDNAGTS QAGFLGLPGG MNNPTETNMG TESLNFENSM PLSVWPIGPV 120 PFGCSCCQVL REIVHTNGIN VTKLEIHGRL GIICHAILTD RSGSTNAVAP GHQYQMFDFC 180 KKSIEYVKQF LSQYCFHRSQ TGYVIVQDPL SGFYEALCVG FLWDENFKNG DFMQPSSSHA 240 GGFRMDQPGN SNNRGKHPKP SLSIQRERTR NLTLKDIEKY FHLPIEEAAR SLDLSVTVLK 300 KICRRYGVLR WPHRKIQSME KQIVLWTGKL NSNDPEERDR AAKIILKLQR GITKIRGGAR

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEDPNSSVPN NNPNDMHPDA IFNFLDFENQ VEDLTTQDIS MLSAFSIHDP SNEEIANDSI  60
DPLDDPVIWD FYNEDNAGTS QAGFLGLPGG MNNPTETNMG TESLNFENSM PLSVWPIGPV  120
PFGCSCCQVL REIVHTNGIN VTKLEIHGRL GIICHAILTD RSGSTNAVAP GHQYQMFDFC  180
KKSIEYVKQF LSQYCFHRSQ TGYVIVQDPL SGFYEALCVG FLWDENFKNG DFMQPSSSHA  240
GGFRMDQPGN SNNRGKHPKP SLSIQRERTR NLTLKDIEKY FHLPIEEAAR SLDLSVTVLK  300
KICRRYGVLR WPHRKIQSME KQIVLWTGKL NSNDPEERDR AAKIILKLQR GITKIRGGAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-13	Nin-like family protein