PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293341.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 595aa MW: 63572.4 Da PI: 9.3067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_021293341.1 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	13.1	0.00029	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_021293341.1 147 WKCEKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MAAASSSTPF FGTREENQTQ MIQQQSSSTP TSSTAPTTAP QKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPNNLS TMGSHLFGSN HMSLGLSQVG SQIPSLQDQN 240 QPPSNMLRLG SAGAAKFEHL IPPSNPSPLQ NMPTSAFFMP DANQGFHHQD HQSHHGHGPF 300 LNKPLHGLMQ LPDLQGNTNN TPVSTNLFNL GFFPNNSAAS SISTSENASA STANLPNSGF 360 LSPNQFNSGN GGGGGQGTAM FSTNMGDQVG SGLSSLYSTS MQHENISPHM SATALLQKAA 420 QMGSTTSNNT SSLLRGLGNS SASGTKSDRP VLSANFGSNY GGGGGGETLR SQMENDSNLQ 480 GLMNSLANGN SSIFGAGHGQ DSNFGGFSGS GMTPAQQSNN ANFCNVNEAK LHENLAASIG 540 GTDKLTLDFL GVGGMVRSMG GGFSQREPHG INISSLDPEV NSAQANQQFG SAKLL

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MAAASSSTPF FGTREENQTQ MIQQQSSSTP TSSTAPTTAP QKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPNNLS TMGSHLFGSN HMSLGLSQVG SQIPSLQDQN  240
QPPSNMLRLG SAGAAKFEHL IPPSNPSPLQ NMPTSAFFMP DANQGFHHQD HQSHHGHGPF  300
LNKPLHGLMQ LPDLQGNTNN TPVSTNLFNL GFFPNNSAAS SISTSENASA STANLPNSGF  360
LSPNQFNSGN GGGGGQGTAM FSTNMGDQVG SGLSSLYSTS MQHENISPHM SATALLQKAA  420
QMGSTTSNNT SSLLRGLGNS SASGTKSDRP VLSANFGSNY GGGGGGETLR SQMENDSNLQ  480
GLMNSLANGN SSIFGAGHGQ DSNFGGFSGS GMTPAQQSNN ANFCNVNEAK LHENLAASIG  540
GTDKLTLDFL GVGGMVRSMG GGFSQREPHG INISSLDPEV NSAQANQQFG SAKLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-132	C2H2 family protein