PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293036.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 585aa MW: 63166.6 Da PI: 9.7874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_021293036.1 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	13.1	0.00028	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_021293036.1 147 WKCEKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MAASSSSGPF FGIRDEDQNQ MKQQPSSTPT SSTGPAPAPP QKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPPSLN PIGNHLYGSS NMSLGLSQVG TQISSIQDQN 240 NQTGDILRLG GGARNTQFDH LLPPSMGSSS SFRPQQPMVS SAAFFMQESH QNFNQEHQPQ 300 QGLLGNKSFQ GLMQFPDIQN NPGNSPSAAN LFNLSFLSNS SNTSGINNNN NANTDNNLSS 360 SGLLISDHFN NENGAGGTSQ APNLFSNNIM GDQITSNIPS LFSSSVQNNN MVPQMSATAL 420 LQKAAQMGSN SSSNSASLLR SFGSSSSSGT KPSNFGGILG DNTGNNLHEL MNSIASGNSS 480 IFGGGSPGVN TYGTGHGQEN PYTNRSSMEQ EKQQQNLNVS AGGSDRLTRD FLGVGQIVRS 540 MSGGVSQREQ QQQQQGMGLS TLGSERNNIT APTGHRSFGG GGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MAASSSSGPF FGIRDEDQNQ MKQQPSSTPT SSTGPAPAPP QKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPPSLN PIGNHLYGSS NMSLGLSQVG TQISSIQDQN  240
NQTGDILRLG GGARNTQFDH LLPPSMGSSS SFRPQQPMVS SAAFFMQESH QNFNQEHQPQ  300
QGLLGNKSFQ GLMQFPDIQN NPGNSPSAAN LFNLSFLSNS SNTSGINNNN NANTDNNLSS  360
SGLLISDHFN NENGAGGTSQ APNLFSNNIM GDQITSNIPS LFSSSVQNNN MVPQMSATAL  420
LQKAAQMGSN SSSNSASLLR SFGSSSSSGT KPSNFGGILG DNTGNNLHEL MNSIASGNSS  480
IFGGGSPGVN TYGTGHGQEN PYTNRSSMEQ EKQQQNLNVS AGGSDRLTRD FLGVGQIVRS  540
MSGGVSQREQ QQQQQGMGLS TLGSERNNIT APTGHRSFGG GGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-121	C2H2 family protein