PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291837.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 1129aa    MW: 129434 Da    PI: 7.1518
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.51.3e-28103053332
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     e+L++cAea+++++l+la++lL+r+ +la+  +++   ++++f+eAL +r ++          +s++         a+++l+  + P l+  +++
  XP_021291837.1  10 EALVACAEAIQDRNLKLADSLLERIWNLAADLRKS--DVVKFFAEALVRRAYG---------LSSPS---------AYFTLL--TPPALTPLYFL 82 
                     78**************************9998877..59*************9.........12222.........222232..45788888999 PP

            GRAS  98 aNqaIl.eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe.fnvlvakrled 188
                        aI   a  g++r H i f +   l   +L+ +L + ++++ s+Ri +++sp  +   k   e+ ++ L+  A +lg+++e  +v++a++l d
  XP_021291837.1  83 PFDAIKtTACMGKKRFHLITFCLPLDLS-DCLFGSLYTASGDSLSVRISVIVSPFLEkiGKIYQEKSKQDLTAKALRLGIKLEdLRVVYANSLGD 176
                     99999626899********997766654.68**********************87777788888999999************857888999**** PP

            GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++ ++ ++ +  +E+++V  + +lh+ll++  ++e      L  +++++P++v++ eq adhn+++F +r+ e+++y+  l+ s  +        
  XP_021291837.1 177 VDASKSDFTRtkDETVIVYYQGKLHQLLADARAMER----ELLKLRQINPEIVIIEEQHADHNDPNFIKRLQESFQYCGPLYSSHCMR------- 260
                     *99998888888****************99999999....55568**********************************999886555....... PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                          r+   r+i n+v ceg++r erh+t ++Wr+ l + G+ +vpl+ +
  XP_021291837.1 261 ---CHRR---RQIGNIVECEGRDRLERHQTWAQWRSLLLANGLLQVPLRPH 305
                     ...3444...99***********************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    
MASSASEALE ALVACAEAIQ DRNLKLADSL LERIWNLAAD LRKSDVVKFF AEALVRRAYG  60
LSSPSAYFTL LTPPALTPLY FLPFDAIKTT ACMGKKRFHL ITFCLPLDLS DCLFGSLYTA  120
SGDSLSVRIS VIVSPFLEKI GKIYQEKSKQ DLTAKALRLG IKLEDLRVVY ANSLGDVDAS  180
KSDFTRTKDE TVIVYYQGKL HQLLADARAM ERELLKLRQI NPEIVIIEEQ HADHNDPNFI  240
KRLQESFQYC GPLYSSHCMR CHRRRQIGNI VECEGRDRLE RHQTWAQWRS LLLANGLLQV  300
PLRPHTPCFL YEDNGCLVFR RWVDGPISFI SAWKHRDAVD HFNPISYNRV QGFNPNPASE  360
DTVRPLQVDP LASSLNRLAG FAEIYDMLED VCLKYELPLA LTWVKRTPNR SMSSPNEKHF  420
LSIETTCSYI NYYRYYYYNE IISKGSFVER CAKRNLLERQ AIAGQALQSK EPFLFEPNIT  480
RLRDYPFAQD ALDSGLEAVL AICLVNRYDS GDVYILEFFL PPFKEIFEEP KSLALRIFED  540
VKNMKKKFVK LRVDGTEVGL QEEAIPNIPR AAMPMRSSPP ASSNAQFLNS NALHQFTVPG  600
DDYAVLEIQG LNEQESGKQT FLEPIENEKV KAYVNDLSIS SAKGRKLRSD VWDEFTKEKY  660
GDGKECAKCS HCGREFDGSS RKGTSHLRNH LEHCKSKRIK IGDKQGNSSK VEDQQGNSSF  720
DHDRSRMDVA RMIIKHQCPL NIVEDEYFST LLKNLQPRFK LQSQEILSSD IFRVYKAEKD  780
RLLEYFDKLS CRFNLTISLW ANDLEKITHC YFTVQFIDDN WELKKKVLAL KNLGSEFDTR  840
IFLENFKRLL RDWNFNVKVC SLIIHNSSSN LEIAEEIRKA WLCFQASHPL STFYIRCDGC  900
INGLLAKDQP GGMLQDVGKS IDGAVKTSSS CLLDIYNKYN KLSQQERKGY PLMNVISDNN  960
WRTCSLVLAI AAILDPRFKF DFVEFSYNKI YGYDAARIHL AIIRSSLTDI FNEYASNMYS  1020
GTSVFDDTNS LALLNGEEST MKSFNRWKNS KRNVNTEASW NSEFDRYDQE PEPVIPMEME  1080
FNVLVWWGEH ASRFPFLGRM ARDILAIPMS SIVSVCFEGK SLMDNSNIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.15e-31GRAS family protein