PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291559.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 601aa    MW: 67495.1 Da    PI: 4.9613
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.77.3e-852305993374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilk 92 
                      lLl++Ae v+ ++  +a++lL++   +  ++g+p+qR + yfteAL++++ r ++s  +k l+ ++    n +e+++ l+      +   P+ +
  XP_021291559.1 230 MLLLAAAEKVAYQQYDCASRLLKQCDYMTFKTGNPVQRSVYYFTEALREKIEReTGSASSKGLRRKPLF--NLDEAMMNLNPtalaCHGQLPFCQ 322
                     68***************************************************4555555555555544..33333333222233688999**** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++++t  qaI+e v++++r+HiiD+ i +G+QW  L+qaLasR e p   l+iT+ +    + k+ +eetg+rL++fA++lg+pf f+++++ ++
  XP_021291559.1 323 ITQFTGIQAIVENVAEAKRIHIIDLAIRNGVQWTVLMQALASRFECPLeLLKITAPAT---NAKHLMEETGKRLSSFAQSLGIPFAFKIIMVPDM 414
                     *******************************************96655499****988...46999************************999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      dl+ + ++++ +Ea+aV  +++   + + +  le+    ++++v+ ++P+++vv+e ea+hns+ F++rf+e l ++sa fd++++ + ++ ++
  XP_021291559.1 415 LDLKEDLFELDAEEAVAVYAAHAFRGMIAMPNRLEN----IMRVVRVINPRLMVVSEIEANHNSPIFVNRFIEVLFFFSAYFDCIATCMKQNYKN 505
                     ***************************966666666....******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r  +E +++++ i+n+va+eg++r+ rh ++  Wr+ + + G+++v+ls     qa+l+ ++++ +   +++ + ++l+ gWk+ pL s+S+W+
  XP_021291559.1 506 REIIESVFFSEGIKNMVAAEGEDRKVRHVNFDVWRAFFVRYGMEEVELSMASLYQADLIRKNFScGSSCTLHVNGKCLLVGWKETPLHSLSVWK 599
                     ****************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    
MADVVFTFDD LNIGGVPDKL SSSDKDFESF EGGGKGKQSS FYGGEYWGET GGIESLPSDY  60
GFYQDDSLEA GFTSSKNRPQ EQQQQQQQPF TDYGHLDGVS VNAAPPPIQT CLEEIAKLGQ  120
IPTGIQDAAE MKKENQYPFS LASLGLLNNY GSGFKRLNGE RRIEGANDIT VLTKEEDRKL  180
STEEIMRVAG EMLIQSSCQT IDSISMLGHP FNLSFSGLSD QEIKDVELAM LLLAAAEKVA  240
YQQYDCASRL LKQCDYMTFK TGNPVQRSVY YFTEALREKI ERETGSASSK GLRRKPLFNL  300
DEAMMNLNPT ALACHGQLPF CQITQFTGIQ AIVENVAEAK RIHIIDLAIR NGVQWTVLMQ  360
ALASRFECPL ELLKITAPAT NAKHLMEETG KRLSSFAQSL GIPFAFKIIM VPDMLDLKED  420
LFELDAEEAV AVYAAHAFRG MIAMPNRLEN IMRVVRVINP RLMVVSEIEA NHNSPIFVNR  480
FIEVLFFFSA YFDCIATCMK QNYKNREIIE SVFFSEGIKN MVAAEGEDRK VRHVNFDVWR  540
AFFVRYGMEE VELSMASLYQ ADLIRKNFSC GSSCTLHVNG KCLLVGWKET PLHSLSVWKF  600
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-51GRAS family protein