PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291460.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 338aa MW: 38528.6 Da PI: 7.0602

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.5e-12	200	225	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_021291460.1 200 YQPDICKDYKETGYCGYGDSCKFMHD 225 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MTDSNESQYP GKEPRQSETE PQQSEQVCNF FRKPTKGKNI RKRTINEDED EDSRNETSLL 60 QNHKKSLKPD NKLYFSTGPS KSAAATESNI ESDKRIFQFE SSREIQVQND SRATATLETE 120 TEVTKDARAI REKVLKQSEE VLKGKNTSSG GEKLYKGMHG YVDHKAGFRR EQTIASEKAG 180 GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWE 240 EAEKARKRNL ALGGEDDDEA GLNQSDDDDD DSLPFACFIC RQPFVDPVVT KCKHYFCEHC 300 ALKHHAKNKK CFVCNQPTLG IFNTAHEIRR KMAEEGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-156	C3H family protein