PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290657.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 756aa MW: 86350.3 Da PI: 6.4375

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.4e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC a++++ k+ +w+vt +++ HnHel XP_021290657.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSSRCGCLASMRIVKRAdfdVPEWRVTGFSNVHNHELL 152 6*************9998874556679***************9***************98887676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG 120 CLASMRIVKR ADFDVPEWRV TGFSNVHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIA MCKKLKDENP 240 QFQYDFKLDG HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDSYDMLL GIWVGVDNYG 300 MTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF 360 CIWHIISKFS DWFSLLLGSR YDDWKSDFYQ LYTLELLEDF EEEWRDMVDK YGLHENKHII 420 SLYALRTFWA LPFLRPYFFA GLTSSCQSET INAFIQRILS AQSQLDRFVE QVAEIVEFND 480 RAGSKQKMQR KLQKVCLKTG SPIESHAATV LTPYAFGKLQ EELLLAPQYA SFLVDEGCFQ 540 VKHHTQMDGG CKVLWVPCEE HISCSCHHFE FSGILCRHVL RVLSSNNCFH IPEQYLPSRW 600 RINSSSSTNL LRNATRQHSE KIQLLESMAS TLIAESIETE ERLDVACEQT AMVLSRIKDL 660 PRPTHSANDI VYNCPSDLIL PEVEDTDGIV QSFTIGTSHE SLTSGKIKDR RSRDGIDIAR 720 KRRHFSGSCC GQFGHDSSDC PMLGGDNLNG DALGYL

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MSEGTSMVME SSENGTDLSQ DDTGTIVEMP EDTILSQQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKLSEDGKM QRNRKSSRCG  120
CLASMRIVKR ADFDVPEWRV TGFSNVHNHE LLKANEVRLL PAYCTITPDD KARICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDYDAIDLIA MCKKLKDENP  240
QFQYDFKLDG HNRLEHIAWS YASSVQLYET FGDAVVFDTT HRMDSYDMLL GIWVGVDNYG  300
MTSFFGCVLL RDENMQSFSW ALKTFLGFMK GKAPQTLLTD QNMWLKEAIA IEMPETKHAF  360
CIWHIISKFS DWFSLLLGSR YDDWKSDFYQ LYTLELLEDF EEEWRDMVDK YGLHENKHII  420
SLYALRTFWA LPFLRPYFFA GLTSSCQSET INAFIQRILS AQSQLDRFVE QVAEIVEFND  480
RAGSKQKMQR KLQKVCLKTG SPIESHAATV LTPYAFGKLQ EELLLAPQYA SFLVDEGCFQ  540
VKHHTQMDGG CKVLWVPCEE HISCSCHHFE FSGILCRHVL RVLSSNNCFH IPEQYLPSRW  600
RINSSSSTNL LRNATRQHSE KIQLLESMAS TLIAESIETE ERLDVACEQT AMVLSRIKDL  660
PRPTHSANDI VYNCPSDLIL PEVEDTDGIV QSFTIGTSHE SLTSGKIKDR RSRDGIDIAR  720
KRRHFSGSCC GQFGHDSSDC PMLGGDNLNG DALGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein