PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290067.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 418aa MW: 46003.7 Da PI: 7.9794

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	69.9	8.1e-22	34	89	3	58
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++hTkv+gRdRR+R++++c +F L++e G+ + ++ti+WLlqq+ p XP_021290067.1 34 KRRRYKGDRHTKVEGRDRRIRIPLTCCSGVFRLTREMGHQTHGQTIQWLLQQSRPD 89 4666788**********************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MDSQTQTLDR QQQSFHPGNA KQEAGTLSLR PSKKRRRYKG DRHTKVEGRD RRIRIPLTCC 60 SGVFRLTREM GHQTHGQTIQ WLLQQSRPDL LLPDPMSCPS RLIGSAPDCM AKGRVRATVV 120 QASTVFLDTP ATLEAFVGGY PRGVSFEAVA VPSSTEDNEV FLKYHASTIE VPGPEVDRLA 180 KIAGKYKVHL VMGVVERAGF YLFSAILFFD SMGRYLGKHR KLMPIASECA VWCCGEKSSL 240 PLYGTTIGKV GGLLYWDNRI PSLRTQLYAK GIEIYCAPTA DAREEWRASM IHIAIEGRCF 300 VLSANQFCQR KDYPLPLKCI DGDSNCDLSL DTVICSGGSV IVSPSGTILA GPNYHGESLI 360 SADLDLEEIT RAKLEVSETG HIVGPDSVGW TANRPNPVLF PTAVKTEALD ELSWSPGL

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MDSQTQTLDR QQQSFHPGNA KQEAGTLSLR PSKKRRRYKG DRHTKVEGRD RRIRIPLTCC  60
SGVFRLTREM GHQTHGQTIQ WLLQQSRPDL LLPDPMSCPS RLIGSAPDCM AKGRVRATVV  120
QASTVFLDTP ATLEAFVGGY PRGVSFEAVA VPSSTEDNEV FLKYHASTIE VPGPEVDRLA  180
KIAGKYKVHL VMGVVERAGF YLFSAILFFD SMGRYLGKHR KLMPIASECA VWCCGEKSSL  240
PLYGTTIGKV GGLLYWDNRI PSLRTQLYAK GIEIYCAPTA DAREEWRASM IHIAIEGRCF  300
VLSANQFCQR KDYPLPLKCI DGDSNCDLSL DTVICSGGSV IVSPSGTILA GPNYHGESLI  360
SADLDLEEIT RAKLEVSETG HIVGPDSVGW TANRPNPVLF PTAVKTEALD ELSWSPGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-18	TCP family protein