PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290066.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 439aa MW: 48162.2 Da PI: 7.9782

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	69.8	8.6e-22	34	89	3	58
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++++ + ++hTkv+gRdRR+R++++c +F L++e G+ + ++ti+WLlqq+ p XP_021290066.1 34 KRRRYKGDRHTKVEGRDRRIRIPLTCCSGVFRLTREMGHQTHGQTIQWLLQQSRPD 89 4666788**********************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MDSQTQTLDR QQQSFHPGNA KQEAGTLSLR PSKKRRRYKG DRHTKVEGRD RRIRIPLTCC 60 SGVFRLTREM GHQTHGQTIQ WLLQQSRPDL LLPDPMSCPS RLIGSAPDCM AKGRVRATVV 120 QASTVFLDTP ATLDKAERLI AGAAAYGSQL VVFPEAFVGG YPRGVSFEAV AVPSSTEDNE 180 VFLKYHASTI EVPGPEVDRL AKIAGKYKVH LVMGVVERAG FYLFSAILFF DSMGRYLGKH 240 RKLMPIASEC AVWCCGEKSS LPLYGTTIGK VGGLLYWDNR IPSLRTQLYA KGIEIYCAPT 300 ADAREEWRAS MIHIAIEGRC FVLSANQFCQ RKDYPLPLKC IDGDSNCDLS LDTVICSGGS 360 VIVSPSGTIL AGPNYHGESL ISADLDLEEI TRAKLEVSET GHIVGPDSVG WTANRPNPVL 420 FPTAVKTEAL DELSWSPGL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MDSQTQTLDR QQQSFHPGNA KQEAGTLSLR PSKKRRRYKG DRHTKVEGRD RRIRIPLTCC  60
SGVFRLTREM GHQTHGQTIQ WLLQQSRPDL LLPDPMSCPS RLIGSAPDCM AKGRVRATVV  120
QASTVFLDTP ATLDKAERLI AGAAAYGSQL VVFPEAFVGG YPRGVSFEAV AVPSSTEDNE  180
VFLKYHASTI EVPGPEVDRL AKIAGKYKVH LVMGVVERAG FYLFSAILFF DSMGRYLGKH  240
RKLMPIASEC AVWCCGEKSS LPLYGTTIGK VGGLLYWDNR IPSLRTQLYA KGIEIYCAPT  300
ADAREEWRAS MIHIAIEGRC FVLSANQFCQ RKDYPLPLKC IDGDSNCDLS LDTVICSGGS  360
VIVSPSGTIL AGPNYHGESL ISADLDLEEI TRAKLEVSET GHIVGPDSVG WTANRPNPVL  420
FPTAVKTEAL DELSWSPGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-18	TCP family protein