PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289005.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ERF

Protein Properties

Length: 580aa MW: 65442.3 Da PI: 4.6368

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.3	1.4e-16	72	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr p ng k r +lg+f a eAa a+++a+++++g XP_021289005.1 72 CKYRGVRQRI-WGKWVAEIRQPI-NGvrvgnKGkNRLWLGTFSNAIEAAIAYDKAARAMYG 130 79***998.******74.5555554346**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MEDGVRARNK KPRRRRNGRE SVEDTIEKWK KYNNDQLQLG EEVGLQKVCK VPAKGSKKGC 60 MQGKGGPENS RCKYRGVRQR IWGKWVAEIR QPINGVRVGN KGKNRLWLGT FSNAIEAAIA 120 YDKAARAMYG PYARLNFPDH SEESAVHNSN KESASSTTET CSTESTSISN SFAEKAKELS 180 IHYSSPAEEP ELHVVEESKV RLVDKPMEKR DCSQVYINEE AGCIAEDTAT ETRGTECNSR 240 NDRKPYKEQG VEVETSKEAI DHELTELMRL HNDTNDYLHN DLKDEGCQLS INYLDSDDYN 300 LQTPFKKKEM ESEVELSQNI LSSAYSGFNF RPNYMDNEEQ DAGISTIDLE PSNDVKVEMP 360 VTRENWKCEL AGSIESIDYN FFSGKDDNLE SELTDGNLGL GFCYKPSTEM KAEAPVLMEE 420 VEVEPRGFTD FNSYKGFGNT YDHMPHEPTG LICQQEMNTT TPTDFKALTP VNYGGFNSFK 480 NKLDFMHSWP AEAITDGKPF ALIRNDNCGL RPKESYNSDQ LESSSTNYPE RGGLQDPIAE 540 AQGGFNQYET GSGEDCKLGF SRLDVDLDLV TDLWFPEHGF

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MEDGVRARNK KPRRRRNGRE SVEDTIEKWK KYNNDQLQLG EEVGLQKVCK VPAKGSKKGC  60
MQGKGGPENS RCKYRGVRQR IWGKWVAEIR QPINGVRVGN KGKNRLWLGT FSNAIEAAIA  120
YDKAARAMYG PYARLNFPDH SEESAVHNSN KESASSTTET CSTESTSISN SFAEKAKELS  180
IHYSSPAEEP ELHVVEESKV RLVDKPMEKR DCSQVYINEE AGCIAEDTAT ETRGTECNSR  240
NDRKPYKEQG VEVETSKEAI DHELTELMRL HNDTNDYLHN DLKDEGCQLS INYLDSDDYN  300
LQTPFKKKEM ESEVELSQNI LSSAYSGFNF RPNYMDNEEQ DAGISTIDLE PSNDVKVEMP  360
VTRENWKCEL AGSIESIDYN FFSGKDDNLE SELTDGNLGL GFCYKPSTEM KAEAPVLMEE  420
VEVEPRGFTD FNSYKGFGNT YDHMPHEPTG LICQQEMNTT TPTDFKALTP VNYGGFNSFK  480
NKLDFMHSWP AEAITDGKPF ALIRNDNCGL RPKESYNSDQ LESSSTNYPE RGGLQDPIAE  540
AQGGFNQYET GSGEDCKLGF SRLDVDLDLV TDLWFPEHGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38340.1	4e-34	ERF family protein