PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021287800.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 409aa MW: 43337.8 Da PI: 7.5869

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021287800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.8	1.3e-40	85	189	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s ++s+ + s++ XP_021287800.1 85 KPAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRNSGTTISAPssksapf 179 5789*****************************************************************99976677776666333333333344 PP TCP 89 .........k 89 + XP_021287800.1 180 sfhsalglyS 189 4444444431 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MEIMEPQSNK SSSSSDHHHH HGQKQEASLQ LVSRDSQPQA AAGGAHGTSS QPQAPAHVPF 60 TGMGSIPNQI GVHSSSPTST SSLAKPAKRP TKDRHTKVDG RGRRIRMPAV CAARVFQLTR 120 ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNV SLRNSGTTIS APSSKSAPFS 180 FHSALGLYSS TNGDESRRFS NTSAGAGMLG FHHQLYPQIL NPDGSMRSSN ENYSTKPFRE 240 DLFKETSQHN AETVGVEANS PKPERTGMQD QEPGSFRAAN IVPAPAMWAV APAATNGGNA 300 FWMLPVGGGA TASATVPEAQ MWTFPAHYSG GGRVSPVQLG SMILQQQQPG GQQLGLGVTE 360 TNMGLLGSGI NLYSNNRVGL AMNLEQQHQE NRTQGSDSGD ENPATDSQR

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MEIMEPQSNK SSSSSDHHHH HGQKQEASLQ LVSRDSQPQA AAGGAHGTSS QPQAPAHVPF  60
TGMGSIPNQI GVHSSSPTST SSLAKPAKRP TKDRHTKVDG RGRRIRMPAV CAARVFQLTR  120
ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNV SLRNSGTTIS APSSKSAPFS  180
FHSALGLYSS TNGDESRRFS NTSAGAGMLG FHHQLYPQIL NPDGSMRSSN ENYSTKPFRE  240
DLFKETSQHN AETVGVEANS PKPERTGMQD QEPGSFRAAN IVPAPAMWAV APAATNGGNA  300
FWMLPVGGGA TASATVPEAQ MWTFPAHYSG GGRVSPVQLG SMILQQQQPG GQQLGLGVTE  360
TNMGLLGSGI NLYSNNRVGL AMNLEQQHQE NRTQGSDSGD ENPATDSQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	2e-70	TCP family protein