PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287296.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 519aa    MW: 57445.8 Da    PI: 6.7839
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3651.1e-1111475181374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkf 93 
                     lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La rla  ++     l +   + ++  s+++  al+l +e +P + f
  XP_021287296.1 147 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGTVGLVAPVMNIMDipSDKKEEALRLVYESCPHIPF 241
                     689***************************************************955433333333344444456999999************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     +h++aN+ Ilea+ege+ vH++D++++    +G QW  L+q+La+R+++pp +lRiT+vg     s ++ + +g+ L+ +A+ lg+++ f+v v 
  XP_021287296.1 242 GHFVANSSILEAFEGESFVHVVDLGMTlglpHGHQWRHLIQSLANRAGKPPsRLRITAVGL----SDHRFHIIGQELEAYAKDLGMNLGFSV-VK 331
                     ***********************98873333788*************888879********....99************************9.79 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++le+l++e+++v  gE+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ 
  XP_021287296.1 332 SNLENLQPEDIKVFDGEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 423
                     9******************************88877777...8**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     +  r+k+E++++++ei+n+v+ceg  r+erhe++ +Wr+r+++aGF+++pl+  + +qak  l k k  +gy+v e++g+lvlgWk++p+v++S+
  XP_021287296.1 424 DTRRAKMEQFYFAEEIKNIVSCEGPGRVERHERVDQWRRRMSRAGFQAAPLR--MITQAKQWLGKNKvCEGYTVVEDKGCLVLGWKSKPIVAASC 516
                     **************************************************96..689**********9*************************** PP

            GRAS 373 Wr 374
                     W+
  XP_021287296.1 517 WK 518
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MAHGFLPNEF QKTDRIDEVT GLDLKLSAMA FCFHPFMSIM GDNACGWSLP FSGETRDTKR  60
LRRTISIPEL TGSSGSLSSG GNSDSCMSRR GSTSSLNSLP RLHFRDHILT YTQRYLAAEA  120
VEEAAAAMIS SEESGGEEDE TADGMRLVQL LIACAEAVAC RDKSHASALL SELRANALVF  180
GSSFQRVASC FVQGLADRLA LVQPLGTVGL VAPVMNIMDI PSDKKEEALR LVYESCPHIP  240
FGHFVANSSI LEAFEGESFV HVVDLGMTLG LPHGHQWRHL IQSLANRAGK PPSRLRITAV  300
GLSDHRFHII GQELEAYAKD LGMNLGFSVV KSNLENLQPE DIKVFDGEVL VVNSILQLHC  360
VVKESRGALN SVLQIIHELS PKVLVLVEQD SSHNGPFFLG RFMEALHYYS AIFDSLDAML  420
PKYDTRRAKM EQFYFAEEIK NIVSCEGPGR VERHERVDQW RRRMSRAGFQ AAPLRMITQA  480
KQWLGKNKVC EGYTVVEDKG CLVLGWKSKP IVAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-77GRAS family protein