PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286225.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 529aa MW: 58032.6 Da PI: 7.9369

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	72	91	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H++ XP_021286225.1 72 VCKECGKGFQSWKALFGHMK 91 6******************7 PP
2	zf-C2H2	11.7	0.0008	445	467	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H XP_021286225.1 445 HECPICLKVFPSGQALGGHKRSH 467 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MRSHMTTNNN SAETNDKLSK KKLVSVNNGG YGANTETGLD AGINGGYVLR GNPKKTWRVA 60 DSSEDTLVHN KVCKECGKGF QSWKALFGHM KCHSEKERAS NNSLEEQDSW TSANQKLVMD 120 SQSDNETAAP SKGRRSKRRT RYMGTANSST FSLTNHVSSS MSEIEQEQEE VALSLMMLSR 180 DVGHWGGLNS VAESSDNNSV FLEAKFEIKA SSYNGNEVRL LKKQKEKELE SGTVDSETFQ 240 DGAGQAEFCA SGLSKTGIRV NKSRNEVSVD ESVKDERNSK SQLDGQFGAE NSEVELSRNL 300 VKQTGVNRAQ LGSNKLNSSK RKLQHSNDPE LKSGSVNKLT TDVLDSEFCK DPHKRSKFEC 360 ITCNKIFHSY QALGGHRASH KKIKGCFASR IDSSENSIET EHSPDPTADC KLVKSIGNEF 420 PIAQLAADSD DKAEISNGVK KSKGHECPIC LKVFPSGQAL GGHKRSHLVA EAKANQTIVI 480 QKPIPEIRDF LDLNLPAPVE EETTAHVGFK PWWVGSSHKH EALVGLISN

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MRSHMTTNNN SAETNDKLSK KKLVSVNNGG YGANTETGLD AGINGGYVLR GNPKKTWRVA  60
DSSEDTLVHN KVCKECGKGF QSWKALFGHM KCHSEKERAS NNSLEEQDSW TSANQKLVMD  120
SQSDNETAAP SKGRRSKRRT RYMGTANSST FSLTNHVSSS MSEIEQEQEE VALSLMMLSR  180
DVGHWGGLNS VAESSDNNSV FLEAKFEIKA SSYNGNEVRL LKKQKEKELE SGTVDSETFQ  240
DGAGQAEFCA SGLSKTGIRV NKSRNEVSVD ESVKDERNSK SQLDGQFGAE NSEVELSRNL  300
VKQTGVNRAQ LGSNKLNSSK RKLQHSNDPE LKSGSVNKLT TDVLDSEFCK DPHKRSKFEC  360
ITCNKIFHSY QALGGHRASH KKIKGCFASR IDSSENSIET EHSPDPTADC KLVKSIGNEF  420
PIAQLAADSD DKAEISNGVK KSKGHECPIC LKVFPSGQAL GGHKRSHLVA EAKANQTIVI  480
QKPIPEIRDF LDLNLPAPVE EETTAHVGFK PWWVGSSHKH EALVGLISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	3e-28	C2H2 family protein