PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286224.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 556aa MW: 61102 Da PI: 7.8591

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	99	118	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H++ XP_021286224.1 99 VCKECGKGFQSWKALFGHMK 118 6******************7 PP
2	zf-C2H2	11.6	0.00085	472	494	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H XP_021286224.1 472 HECPICLKVFPSGQALGGHKRSH 494 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MEEDQEFKHV CKFCSKSFPC GRSLGGHMRS HMTTNNNSAE TNDKLSKKKL VSVNNGGYGA 60 NTETGLDAGI NGGYVLRGNP KKTWRVADSS EDTLVHNKVC KECGKGFQSW KALFGHMKCH 120 SEKERASNNS LEEQDSWTSA NQKLVMDSQS DNETAAPSKG RRSKRRTRYM GTANSSTFSL 180 TNHVSSSMSE IEQEQEEVAL SLMMLSRDVG HWGGLNSVAE SSDNNSVFLE AKFEIKASSY 240 NGNEVRLLKK QKEKELESGT VDSETFQDGA GQAEFCASGL SKTGIRVNKS RNEVSVDESV 300 KDERNSKSQL DGQFGAENSE VELSRNLVKQ TGVNRAQLGS NKLNSSKRKL QHSNDPELKS 360 GSVNKLTTDV LDSEFCKDPH KRSKFECITC NKIFHSYQAL GGHRASHKKI KGCFASRIDS 420 SENSIETEHS PDPTADCKLV KSIGNEFPIA QLAADSDDKA EISNGVKKSK GHECPICLKV 480 FPSGQALGGH KRSHLVAEAK ANQTIVIQKP IPEIRDFLDL NLPAPVEEET TAHVGFKPWW 540 VGSSHKHEAL VGLISN

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MEEDQEFKHV CKFCSKSFPC GRSLGGHMRS HMTTNNNSAE TNDKLSKKKL VSVNNGGYGA  60
NTETGLDAGI NGGYVLRGNP KKTWRVADSS EDTLVHNKVC KECGKGFQSW KALFGHMKCH  120
SEKERASNNS LEEQDSWTSA NQKLVMDSQS DNETAAPSKG RRSKRRTRYM GTANSSTFSL  180
TNHVSSSMSE IEQEQEEVAL SLMMLSRDVG HWGGLNSVAE SSDNNSVFLE AKFEIKASSY  240
NGNEVRLLKK QKEKELESGT VDSETFQDGA GQAEFCASGL SKTGIRVNKS RNEVSVDESV  300
KDERNSKSQL DGQFGAENSE VELSRNLVKQ TGVNRAQLGS NKLNSSKRKL QHSNDPELKS  360
GSVNKLTTDV LDSEFCKDPH KRSKFECITC NKIFHSYQAL GGHRASHKKI KGCFASRIDS  420
SENSIETEHS PDPTADCKLV KSIGNEFPIA QLAADSDDKA EISNGVKKSK GHECPICLKV  480
FPSGQALGGH KRSHLVAEAK ANQTIVIQKP IPEIRDFLDL NLPAPVEEET TAHVGFKPWW  540
VGSSHKHEAL VGLISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-38	C2H2 family protein