PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285842.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 553aa MW: 58484.9 Da PI: 7.4486

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.6	1.5e-40	171	298	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ XP_021285842.1 171 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHQSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphs 265 5699****************************************************************999888888888885555555555666 PP TCP 89 .......................kaaksaakskksqksaasalnlakesr 115 l ++++++ XP_021285842.1 266 fhgalalashhhhhpyeegfahsX-----------------LLGFHHHQQ 298 666665544444444444444331.................222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MELTDLQSNK QSXHSNSSNN NNSSNNSTEP HHQSSHHHLH HHHHHHHLQH QKQSLSPQLV 60 VPFDGTRSSG PXAGNPFNMG SISHPHHHHH LLLHPASSTT TTTTTPPLSS SSSSSSSAST 120 TTTNPPQLVD ASLAIATRST SVNVDSTKKN QPNLPLSSTT TTTTTTVANP PVKRSTKDRH 180 TKVDGRGRRI RMPATCAARV FQLTRELGHQ SDGETIEWLL QQAEPAIIAA TGTGTIPANF 240 STLNVSLRSS GSTLSAPPSK SAPHSFHGAL ALASHHHHHP YEEGFAHSXL LGFHHHQQQQ 300 QQQQQQHLLT ADQIAEALPG AXGGDSGNSS ENYIRKRFRE DLFKDDNQQQ GESGSGGGGG 360 SGDGSPIKAF KSGLSQLPKP QQDAGSSGLL RPSNILPATA MWAVAPAPSS GAGSTFWMLP 420 VTAGAGGPSV ATGASGAGPS EPQMWPFGTP GPASGNTLQA PLHFVPRFNL PGSVEFQGGR 480 PSPLQLGSML MQQQPSQHLG LGMSESNLGM LAALNAYSRG GSNINSEQNN PLEHHQHQPQ 540 GTDSGDEDPN NSQ

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MELTDLQSNK QSXHSNSSNN NNSSNNSTEP HHQSSHHHLH HHHHHHHLQH QKQSLSPQLV  60
VPFDGTRSSG PXAGNPFNMG SISHPHHHHH LLLHPASSTT TTTTTPPLSS SSSSSSSAST  120
TTTNPPQLVD ASLAIATRST SVNVDSTKKN QPNLPLSSTT TTTTTTVANP PVKRSTKDRH  180
TKVDGRGRRI RMPATCAARV FQLTRELGHQ SDGETIEWLL QQAEPAIIAA TGTGTIPANF  240
STLNVSLRSS GSTLSAPPSK SAPHSFHGAL ALASHHHHHP YEEGFAHSXL LGFHHHQQQQ  300
QQQQQQHLLT ADQIAEALPG AXGGDSGNSS ENYIRKRFRE DLFKDDNQQQ GESGSGGGGG  360
SGDGSPIKAF KSGLSQLPKP QQDAGSSGLL RPSNILPATA MWAVAPAPSS GAGSTFWMLP  420
VTAGAGGPSV ATGASGAGPS EPQMWPFGTP GPASGNTLQA PLHFVPRFNL PGSVEFQGGR  480
PSPLQLGSML MQQQPSQHLG LGMSESNLGM LAALNAYSRG GSNINSEQNN PLEHHQHQPQ  540
GTDSGDEDPN NSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-78	TCP family protein