PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285771.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 1661aa MW: 187896 Da PI: 8.7614

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	1570	1592	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H XP_021285771.1 1570 CPvkGCGKKFFSHKYLVQHRRVH 1592 9999*****************99 PP
2	zf-C2H2	11.6	0.00086	1628	1654	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H XP_021285771.1 1628 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1654 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1661 aa Download sequence
MAASSLSPEP SQEVFSWLKS LPLAPEYRPT LAEFQDPIAY IFKIEKEASQ YGICKIIPPV 60 PPAPKKTAIG NLNRSLLARA AANTSSDSKP APTFTTRQQQ IGFCPRKPRP VQKPVWQSGE 120 YYTFQEFEAK AKNFERSYLK RYSKKGSLSA LEVETLFWKA TVDKPFSVEY ANDMPGSAFV 180 PLSSKKSSGG GREAGEGVTV GETPWNMRAV SRAKGSLLRF MKDEIPGVTS PMVYIAMLFS 240 WFAWHVEDHD LHSLNYLHMG AGKTWYGVPR DAAVAFEEVV RLDGYGGEFN PLVTFSTLGE 300 KTTVMSPEVF VRAGIPCCRL VQNAGEFVVT FPRAYHSGFS QGFNFGEAAN IATPEWLRVA 360 RDAAIRRASI NYPPMVSHFQ LLYDLALELC SRAPMSINAK PKSSRLKDKK KSEGETLVKE 420 LFVQNLMQNN DLLHILGKGS SVVLLPKSSS DISLCSDLRV ASQLRINPRM SRGLCNYKDV 480 VKLSKDLASD EIMVGGNEEI KGVKGFYSVK GKFASMYEGT RDSAFNGTDH LCRLPSQTLN 540 MSTEGESAVQ GDTLSDQRLF SCVTCGILCF SCIAVLQPTE QAARYLMSAD CSFFNDWTVG 600 SGVTRDGFNT AHGGVITSEQ NSCTRWMNKR APNALYDVPV QSVEDKFHMA DQSNQVVEDT 660 AKGGDTSALG LLASTYGNSS DSEEDHVEPN VAVSGDETNS ANCSSERKFQ YNGSGFSPGD 720 ANGSNNPSLS RLESEEEAPV HVIDCYSEPG SRRVDIKSRS PQAFDHIVEF ETDNLASRRS 780 IGLEDKFRDP VTASHANPSY SPATHGAEKM RFSKTMVPME NADIPFAPRS DEDSSRMHVF 840 CLEHAVEVEQ QLRQIGGVHV FLLCHPEYPK IEAEAKLMTE ELGIDYPWND ILFGDAAKED 900 EERIQSALDS EDAIPGNGDW AVKLGINLFY SANLSRSTLY SKQMPYNCVI YSAFGRNSPG 960 SSPTKLNVYG RRSGKQKKVV AGKWCGKVWM SNQVHPFLAQ RDPEEQEQER SFHAWATSDE 1020 NLERKPENVH KAETTKVAKK FNRKRKMRPE IASSKKVKCI EIEGAVSDDS LDGGSLRQQQ 1080 IFFRGKQPRL IQKEEAISYD LLEDDSLLQH RNLSRKKQAK FIEREGAESE DAEEDFTHQQ 1140 HWRNLRGKQG KYIEEDDAVS GDSLDESSLK QYRRIPRSWQ AKFREREDTI SEDELEEISH 1200 QLHRRIPRRR QIKSCEKNDA ISDDSRADNS LKQYRRMPRG RQANFVVRDD TMSDDASEDD 1260 SQHQLRRIPK GKQMKCMERD DAFSDDSLED NLQQQHRIPR RKVAKFTDRE DVVSFDSLKG 1320 SSHQQRRRVS RSQLTKFIER EDAVSSDSPD DSSLQQLRRI PRSKQTKILE REDAVSDDSL 1380 DDTSQQQLRK TPRSRQGKFI EREDAVLYDS LDENYHQPNR RTLRSRKKKA QTPRQIKQET 1440 PQNVKQGKRR TTKQVVSQQI KQETPRNRNT KIEESARQCN SYGEDELEGG PSTRLRKRVR 1500 KPLKESETKP KEKKQASKRK VKNASNVKTL AGHNTSKVRD EEAEYQCDME GCTMSFGSKQ 1560 ELLLHKRNIC PVKGCGKKFF SHKYLVQHRR VHMDDRPLKC PWKGCKMTFK WAWARTEHIR 1620 VHTGARPYVC AEEGCGQTFR FVSDFSRHKR KTGHSAKKGR G

Sequence ? help Back to Top

Protein Sequence Length: 1661 aa Download sequence

MAASSLSPEP SQEVFSWLKS LPLAPEYRPT LAEFQDPIAY IFKIEKEASQ YGICKIIPPV  60
PPAPKKTAIG NLNRSLLARA AANTSSDSKP APTFTTRQQQ IGFCPRKPRP VQKPVWQSGE  120
YYTFQEFEAK AKNFERSYLK RYSKKGSLSA LEVETLFWKA TVDKPFSVEY ANDMPGSAFV  180
PLSSKKSSGG GREAGEGVTV GETPWNMRAV SRAKGSLLRF MKDEIPGVTS PMVYIAMLFS  240
WFAWHVEDHD LHSLNYLHMG AGKTWYGVPR DAAVAFEEVV RLDGYGGEFN PLVTFSTLGE  300
KTTVMSPEVF VRAGIPCCRL VQNAGEFVVT FPRAYHSGFS QGFNFGEAAN IATPEWLRVA  360
RDAAIRRASI NYPPMVSHFQ LLYDLALELC SRAPMSINAK PKSSRLKDKK KSEGETLVKE  420
LFVQNLMQNN DLLHILGKGS SVVLLPKSSS DISLCSDLRV ASQLRINPRM SRGLCNYKDV  480
VKLSKDLASD EIMVGGNEEI KGVKGFYSVK GKFASMYEGT RDSAFNGTDH LCRLPSQTLN  540
MSTEGESAVQ GDTLSDQRLF SCVTCGILCF SCIAVLQPTE QAARYLMSAD CSFFNDWTVG  600
SGVTRDGFNT AHGGVITSEQ NSCTRWMNKR APNALYDVPV QSVEDKFHMA DQSNQVVEDT  660
AKGGDTSALG LLASTYGNSS DSEEDHVEPN VAVSGDETNS ANCSSERKFQ YNGSGFSPGD  720
ANGSNNPSLS RLESEEEAPV HVIDCYSEPG SRRVDIKSRS PQAFDHIVEF ETDNLASRRS  780
IGLEDKFRDP VTASHANPSY SPATHGAEKM RFSKTMVPME NADIPFAPRS DEDSSRMHVF  840
CLEHAVEVEQ QLRQIGGVHV FLLCHPEYPK IEAEAKLMTE ELGIDYPWND ILFGDAAKED  900
EERIQSALDS EDAIPGNGDW AVKLGINLFY SANLSRSTLY SKQMPYNCVI YSAFGRNSPG  960
SSPTKLNVYG RRSGKQKKVV AGKWCGKVWM SNQVHPFLAQ RDPEEQEQER SFHAWATSDE  1020
NLERKPENVH KAETTKVAKK FNRKRKMRPE IASSKKVKCI EIEGAVSDDS LDGGSLRQQQ  1080
IFFRGKQPRL IQKEEAISYD LLEDDSLLQH RNLSRKKQAK FIEREGAESE DAEEDFTHQQ  1140
HWRNLRGKQG KYIEEDDAVS GDSLDESSLK QYRRIPRSWQ AKFREREDTI SEDELEEISH  1200
QLHRRIPRRR QIKSCEKNDA ISDDSRADNS LKQYRRMPRG RQANFVVRDD TMSDDASEDD  1260
SQHQLRRIPK GKQMKCMERD DAFSDDSLED NLQQQHRIPR RKVAKFTDRE DVVSFDSLKG  1320
SSHQQRRRVS RSQLTKFIER EDAVSSDSPD DSSLQQLRRI PRSKQTKILE REDAVSDDSL  1380
DDTSQQQLRK TPRSRQGKFI EREDAVLYDS LDENYHQPNR RTLRSRKKKA QTPRQIKQET  1440
PQNVKQGKRR TTKQVVSQQI KQETPRNRNT KIEESARQCN SYGEDELEGG PSTRLRKRVR  1500
KPLKESETKP KEKKQASKRK VKNASNVKTL AGHNTSKVRD EEAEYQCDME GCTMSFGSKQ  1560
ELLLHKRNIC PVKGCGKKFF SHKYLVQHRR VHMDDRPLKC PWKGCKMTFK WAWARTEHIR  1620
VHTGARPYVC AEEGCGQTFR FVSDFSRHKR KTGHSAKKGR G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1494	1500	RLRKRVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein