PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285482.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28262.1 Da    PI: 10.0182
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  XP_021285482.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box1059.1e-35831749100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +e  ++ s++ e+akLk+++e Lqr+qRh++Ge+L++Lsl+eLq+LeqqLe++lk++Rs+Kn+l++e+i+elqkk k+lqe+n++L kk++e
  XP_021285482.1  83 NEVDQNGSWTLEHAKLKARMEVLQRNQRHFMGEELDNLSLRELQNLEQQLESALKHVRSRKNQLMFESISELQKKDKALQEQNNMLAKKVKE 174
                     56667899*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD  60
ACMERILERY ERYSFADRQL DANEVDQNGS WTLEHAKLKA RMEVLQRNQR HFMGEELDNL  120
SLRELQNLEQ QLESALKHVR SRKNQLMFES ISELQKKDKA LQEQNNMLAK KVKEKEKAVA  180
QQAQWEQQNN CQDTSAIPLP QPMRSSNIRG THEARSSGRD GEGNPAQHRG ANALLPPWMI  240
RHLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-89MIKC_MADS family protein