PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285434.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 951aa    MW: 104528 Da    PI: 5.0959
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   +++
  XP_021285434.1 149 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDE 239
                     99*********************999*****954444.4.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+v+r+
  XP_021285434.1 240 KSQLMVGVRRA 250
                     7778*****97 PP
2Auxin_resp112.83.2e-37275358183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k+++ ++vsvGmRf m+fet++s +rr++Gt vg+ dldp+rWp+SkWr+L+
  XP_021285434.1 275 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVYgTQVSVGMRFGMMFETDESGKRRYMGTLVGIGDLDPLRWPGSKWRNLQ 358
                     79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    
MGSVVEEKIK PGALVNGGPQ ATLLEQMKLL KEMQDQSGAR KAINSELWHA CAGPLVSLPQ  60
VGSLVYYFPQ GHSEQVAVST KRMATSQIPN YPNLPSQLMC QVHNVTLHAD RDTDEIYAQM  120
SLQPVNSEKD VFPIPDFGLK SSKHPNEFFC KTLTASDTST HGGFSVPRRA AEKLFPPLDY  180
TMQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG DSVLFIRDEK  240
SQLMVGVRRA NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN PRACPSEFVI  300
PLAKYRKSVY GTQVSVGMRF GMMFETDESG KRRYMGTLVG IGDLDPLRWP GSKWRNLQVE  360
WDEPGCNDKP NRVSAWEIET PESLFIFPSL TSGLKRPLHP GILGAESEWG SLIKRPLLQF  420
PENGNGNLPY SISNLCSEQL MKMMMKPQLV NHLGVFAPTL QQISAGKGSP LEEMKNLQST  480
SNQKPQLIQS ENLLVENQNL SQLVPDQPDP INSNSPKINA NGNLHPPANK FESQTQARSN  540
NEKLKLESEH STDQLSQLTS TSECNEEKLA ANAASPSTIL NQLAFPNQNQ IPFPLQNNPW  600
PIQSQLESSV LQAHQMQVSQ ADISPLSSFL PFLDSDEWTS HLSACQPLAG IYRSPGPVPV  660
VGLQDSSAVF TEATDPSLTT GVQDTWDHQL NNCRILSHAD QLTSIPQQDP YNLSSGGVKD  720
LSDDSNNQSG IYSCLNIDVS NGGSAVIDPS VSSAILDEFC SLKDADFQNP SDCLVGNFSS  780
SQDVQSQITS ASLADSQAFS RQELPDSSGG TSSSNVDFDE SGLLQNNSWQ QMAPRVRTYT  840
KVQKAGSVGR SIDVTSFKNY DELVSAIECM FGLKGLLNDR RGSGWKLVYV DYENDVLLVG  900
DDPWEEFVGC VRCIRILSPT EVQQMSEEGM KLLNSATVQG INGTNSEGCD A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein