PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285244.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 271aa    MW: 30276.4 Da    PI: 7.9979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06114133120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  nL+ H+
  XP_021285244.1 114 FSCHVCFKTFNRYNNLQMHM 133
                     89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MEPSDISYDS DLVSSTNYHT DVEPLDLFPG AMKNSLEPMP LLSCFLGSSD ATLDDNPKAE  60
CSEDKEDVTV ALHIGLPDPS NTPISPNGKD TANGAAKQYW IPTPEQILIG FTNFSCHVCF  120
KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCAEGCKNN IEHPRAKPLK  180
DFRTLQTHYK RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD  240
HIKAFGSGHG PFPPSFDGVE VLQDTASSLH V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-118C2H2 family protein