PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284472.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

DBB

Protein Properties

Length: 312aa MW: 33690 Da PI: 6.4068

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.1e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC+ ++ lC+ C H+ H+ XP_021284472.1 4 QCDVCNKEEASVFCTADEAALCDACDHRVHHAnklaskHE 43 7**************************9964446666665 PP
2	zf-B_box	28.5	3.2e-09	55	93	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++ek++ lfC++++ lC+dC + +H Ht XP_021284472.1 55 QAPLCDICQEKRAFLFCQQDRAILCRDCDVPIHAAneHT 93 7899****************************9556765 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MKIQCDVCNK EEASVFCTAD EAALCDACDH RVHHANKLAS KHERFSLLHP ASSKQAPLCD 60 ICQEKRAFLF CQQDRAILCR DCDVPIHAAN EHTQKHNRFL LTGVKLSATS ALYTSSSSSS 120 IPSLSTGCDS VPEFKSQPSI KNPVSASPTN LNPFSLAKSL PISTTAAAAA AAVTNKSGGD 180 NLLPNEGGGS TSSISEYLIE MLPGWHFEDF LDSSSPPFGF CKSDDGMLPF SDIDLESNMS 240 SFSPESLGLW VPQSPSPLYP PQCSSPMGGQ IGFKEKKEII GMKATRRWTD DAFTVPQISP 300 PSTGSKRSRP LW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	3e-89	DBB family protein