PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284458.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARF

Protein Properties

Length: 662aa MW: 73250.8 Da PI: 7.7266

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.2	1.3e-22	203	304	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d + +W++++iyr++++r++lt+GW++Fv++++L +gD+v+F+ ++ XP_021284458.1 203 FAKILTPSDANNGGGFSVPRFCADSIfppldynAEPPVQ--TLSVTDVRCGVWDFRHIYRGTPRRHLLTTGWSKFVNQKKLIAGDSVLFM--RDC 293 89*******************999985444444..9********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++++++v+r+ XP_021284458.1 294 NGNMFIGVRRA 304 9999**986 PP
2	Auxin_resp	84.8	1.7e-28	340	423	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++ +FevvY+Pra+ ++Fvv++e ve+ l++ ++ G+R+kma+etedss+ ++ +Gtv++ d+ W++S+Wr+L+ XP_021284458.1 340 AAERAAKGLPFEVVYYPRAGLADFVVRAELVEAGLNIFWAGGTRVKMAVETEDSSRMTWfQGTVMSAAVPDSGPWTGSPWRMLQ 423 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MAFPWLLVSS NANKTLLSCP LLRPRXGTLS FLPDLRHTKK HYKHWKKESL GLCIFSTHAT 60 AVLSYFSFIP LNSLPFFSTQ TLSPPMPPPR PPLPPPELRH VDSRIWRACA GSSIQIPTVH 120 ARVYYFPQGH VEQSWGSTPA LSSLVLSRPL IPCVISEVHC LADPKTDEVF AKLLLVPVDP 180 SRLPNQFLNI NGDDEDSDKI VSFAKILTPS DANNGGGFSV PRFCADSIFP PLDYNAEPPV 240 QTLSVTDVRC GVWDFRHIYR GTPRRHLLTT GWSKFVNQKK LIAGDSVLFM RDCNGNMFIG 300 VRRAMKREAA XDFGRWREPS DVKQCKGGEG RMTAEAVAEA AERAAKGLPF EVVYYPRAGL 360 ADFVVRAELV EAGLNIFWAG GTRVKMAVET EDSSRMTWFQ GTVMSAAVPD SGPWTGSPWR 420 MLQVAWDEPE VLQNAKRVSP WQVEIVSSSP LHSSFPSAKK LKFSQDSGRA DAEGEIIFPM 480 TGLTNSMMGY MNPSMLNYNS FPAGMQGARQ NHFHLQSLTN YASENTPIMC TDNFSGNYMV 540 PKLKRRSTEL NIGSSQSDNL SPDSQSSILS YGTEVTENGG SNSTKVGVSS FQLFGKIIHM 600 KEPVRSRFDD VGSIEDDGGK RYDEAAGPEK SLDLSLAYGY SNLLDRLDVQ CQRASAVDGF 660 SL

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MAFPWLLVSS NANKTLLSCP LLRPRXGTLS FLPDLRHTKK HYKHWKKESL GLCIFSTHAT  60
AVLSYFSFIP LNSLPFFSTQ TLSPPMPPPR PPLPPPELRH VDSRIWRACA GSSIQIPTVH  120
ARVYYFPQGH VEQSWGSTPA LSSLVLSRPL IPCVISEVHC LADPKTDEVF AKLLLVPVDP  180
SRLPNQFLNI NGDDEDSDKI VSFAKILTPS DANNGGGFSV PRFCADSIFP PLDYNAEPPV  240
QTLSVTDVRC GVWDFRHIYR GTPRRHLLTT GWSKFVNQKK LIAGDSVLFM RDCNGNMFIG  300
VRRAMKREAA XDFGRWREPS DVKQCKGGEG RMTAEAVAEA AERAAKGLPF EVVYYPRAGL  360
ADFVVRAELV EAGLNIFWAG GTRVKMAVET EDSSRMTWFQ GTVMSAAVPD SGPWTGSPWR  420
MLQVAWDEPE VLQNAKRVSP WQVEIVSSSP LHSSFPSAKK LKFSQDSGRA DAEGEIIFPM  480
TGLTNSMMGY MNPSMLNYNS FPAGMQGARQ NHFHLQSLTN YASENTPIMC TDNFSGNYMV  540
PKLKRRSTEL NIGSSQSDNL SPDSQSSILS YGTEVTENGG SNSTKVGVSS FQLFGKIIHM  600
KEPVRSRFDD VGSIEDDGGK RYDEAAGPEK SLDLSLAYGY SNLLDRLDVQ CQRASAVDGF  660
SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-179	ARF family protein