PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282267.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 292aa MW: 32395.9 Da PI: 8.3331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	227	249	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H XP_021282267.1 227 ECPQCGAKFSSVTTLVEHVEKvH 249 5*****************99888 PP
2	zf-C2H2	15.3	5.6e-05	264	286	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L+ H + H XP_021282267.1 264 VCPRCSKGFRDPVALVEHVERdH 286 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MGTPEFPDLG KHCSVEDCKQ IDFLPFTCDR CRLVFCLEHR SYIKHHCPKA DKKDVTVVIC 60 PLCAKGVRLI PDEDPNITWE THVNTECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD 120 CTIDHCLKHR FGPDHKCPGP KKPDSGFPFM GLLSKSRKEE SKPNRAPAPS STNWATSFRN 180 AASTVRASAE ASMTKLSSEL SQKWQIARDG VGLSSSSSNG STAQAEECPQ CGAKFSSVTT 240 LVEHVEKVHE RNNQSRVFKM SIDVCPRCSK GFRDPVALVE HVERDHGGTS KA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-134	C2H2 family protein