PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282028.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 727aa MW: 78633.9 Da PI: 6.2732

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_021282028.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MCCGSERLKH TPSPTTSNIS FEDSRHPSVD MNHLTVETED TFASLLELAA NNDVEGFKLT 60 IERDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSS SDADVNRACG 120 HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANMVDANGH LPVDVVVVPP KLQALKSTLG 180 ELLATESSVL ERNLRVSTAV ANSSSPPLSP SQENGSPTSG SDSPMKSKST DAPISSASEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE 360 ELRPLYVSTG SAVPSPRSST SGATAMDFAT ALSLLPGSPS SVSVMSPSPF TPPMSPSANG 420 MSHSNVGWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPTE DFNLLPDFDV QQQQLINELS 480 SLTQPSMSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQALASAVFS PTHKSALLNQ 540 FQQQQSVLSP INTNFSPKNI EHPLLQASLS GRMSPRNVEP ISPMGSRVSM LAQREKQQQF 600 RSLSSRELGS GSTAIVGSPV NSWSKWGSSN GKPDWAVNAD ELGKLRRSSS FELGNGEEPD 660 LSWVQSLVKE SPTEIKDKMA APVSGVAPNV SSSEGSNLNT QIDPVDHAVL GAWLEQMQLD 720 QLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MCCGSERLKH TPSPTTSNIS FEDSRHPSVD MNHLTVETED TFASLLELAA NNDVEGFKLT  60
IERDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVAATYGS IDVIKLILSS SDADVNRACG  120
HDKSTALHCA ASGGAVNAID VVKLLLAAGA DANMVDANGH LPVDVVVVPP KLQALKSTLG  180
ELLATESSVL ERNLRVSTAV ANSSSPPLSP SQENGSPTSG SDSPMKSKST DAPISSASEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTAE  360
ELRPLYVSTG SAVPSPRSST SGATAMDFAT ALSLLPGSPS SVSVMSPSPF TPPMSPSANG  420
MSHSNVGWPQ PNVPALHLPG SNLQSSRLRS SLNARDIPTE DFNLLPDFDV QQQQLINELS  480
SLTQPSMSSN SLNRSGRLKT LTPSNLDDLF SAESSSPRYS DQALASAVFS PTHKSALLNQ  540
FQQQQSVLSP INTNFSPKNI EHPLLQASLS GRMSPRNVEP ISPMGSRVSM LAQREKQQQF  600
RSLSSRELGS GSTAIVGSPV NSWSKWGSSN GKPDWAVNAD ELGKLRRSSS FELGNGEEPD  660
LSWVQSLVKE SPTEIKDKMA APVSGVAPNV SSSEGSNLNT QIDPVDHAVL GAWLEQMQLD  720
QLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein