PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281793.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 693aa MW: 76944.3 Da PI: 7.9833

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	10	64	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47 ++ W t+E++ll++av+++G+++W+++a +++ + +t+ +c+ ++q++ XP_021281793.1 10 KQTWGTWEELLLACAVHRYGTECWDSVAMELQkrtstlqhLFLTPLSCQQKFQDL 64 789*****************************88888888888888888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MAKPDNFPEK QTWGTWEELL LACAVHRYGT ECWDSVAMEL QKRTSTLQHL FLTPLSCQQK 60 FQDLKRRFAE NDVGGDDAKT TNNITTAVPW LDELRKLRVA ELRREVQQYD LSIVSLQLKV 120 QRLKEEREQS LEDNGKETEK RDLEREEESD KKEEENEPEN QIQKPVHGGE ESDRENRSVN 180 ESNSTDPKDE SPGAGPEEAK VEPVSVEPEG GETGKEVENE KPTGEDSCNG SCDSVAKESA 240 GNSERVDPGT EPGDSPESVA ESKGEEPNRE SSDVQSSASL SGKEKKRAEP DEPDNEELDQ 300 SPAIKVSIES QPLVEFLEIF RSHKLGSLFE RRLDSQETPD YLNLVRQHLD FETIRTRLEE 360 GWYSGCKSKF FRDLLLLLNN AIVFFGKKSL EYAAAVELRQ LVSKEIAVQI PNTNLLPKAQ 420 SCTLLESQMP MKQEPEPALS LSMKPKLSVP LIACRKRSSI TAKASTSSSG QDKKRQPIAT 480 LMNEKPVLDW KQNDKSPEKA EESLVTKKRT RERSASGARK ASKNVKTRSN TSTNKNSDAN 540 TNTAISSKGG SSNEDLESKA EKEKTNTNIS SKKRSAANFL NRMRRSSSSN NGPLIETLKG 600 VISSDNGKGD GGEQKKNRNS KGDQRKDQIS TPRTRSGGKR AKERGSPAKR STGRPPKRAA 660 APSPATPSVP AKRGREAVEN ESGSGHAKKR SRK

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MAKPDNFPEK QTWGTWEELL LACAVHRYGT ECWDSVAMEL QKRTSTLQHL FLTPLSCQQK  60
FQDLKRRFAE NDVGGDDAKT TNNITTAVPW LDELRKLRVA ELRREVQQYD LSIVSLQLKV  120
QRLKEEREQS LEDNGKETEK RDLEREEESD KKEEENEPEN QIQKPVHGGE ESDRENRSVN  180
ESNSTDPKDE SPGAGPEEAK VEPVSVEPEG GETGKEVENE KPTGEDSCNG SCDSVAKESA  240
GNSERVDPGT EPGDSPESVA ESKGEEPNRE SSDVQSSASL SGKEKKRAEP DEPDNEELDQ  300
SPAIKVSIES QPLVEFLEIF RSHKLGSLFE RRLDSQETPD YLNLVRQHLD FETIRTRLEE  360
GWYSGCKSKF FRDLLLLLNN AIVFFGKKSL EYAAAVELRQ LVSKEIAVQI PNTNLLPKAQ  420
SCTLLESQMP MKQEPEPALS LSMKPKLSVP LIACRKRSSI TAKASTSSSG QDKKRQPIAT  480
LMNEKPVLDW KQNDKSPEKA EESLVTKKRT RERSASGARK ASKNVKTRSN TSTNKNSDAN  540
TNTAISSKGG SSNEDLESKA EKEKTNTNIS SKKRSAANFL NRMRRSSSSN NGPLIETLKG  600
VISSDNGKGD GGEQKKNRNS KGDQRKDQIS TPRTRSGGKR AKERGSPAKR STGRPPKRAA  660
APSPATPSVP AKRGREAVEN ESGSGHAKKR SRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	1e-128	MYB_related family protein