PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281303.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 224aa    MW: 25176.1 Da    PI: 9.1125
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.17e-3417112195
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++r+kC ++C+lapyfpa+++++f++vhk+FG+sn +k+++++++ee r+++++sl++eA +r++dPv G +g ++k+ ++l   k++ 
  XP_021281303.1  17 ACAACKHQRKKCDENCILAPYFPADRSREFQAVHKVFGVSNATKIVRNANTEEdRKRVADSLIWEAFCRQKDPVLGPYGEYRKIYEELTLYKSQN 111
                     7************************************************77766*******************************9999888776 PP

          DUF260  95 a 95 
                     +
  XP_021281303.1 112 Q 112
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MQRNNNNGVA AAGVHPACAA CKHQRKKCDE NCILAPYFPA DRSREFQAVH KVFGVSNATK  60
IVRNANTEED RKRVADSLIW EAFCRQKDPV LGPYGEYRKI YEELTLYKSQ NQMMLLQVQG  120
RDEEAAAAAA AFKMPPAVTE WNNNGNKRID VKGAFNNPAL RYDHGDSLVH FTTYGYPSHS  180
DKPSVQEKGI HNATTLVPLQ YYPSGNLXSH FQRKTTSTPP HHVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-40LBD family protein