PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021280771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22740.9 Da PI: 7.9917 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.8e-40 | 17 | 118 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l XP_021280771.1 17 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 111 7*************************99******************************************************************* PP DUF260 95 allkeel 101 ++k++l XP_021280771.1 112 MQVKAQL 118 *999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MASSGSATAT ATATGSPCGA CKFLRRKCAS DCIFAPYFCS EQGPARFAAI HKVFGASNVS 60 KLLLHIPAHD RCEAVVTIAY EAQARIRDPV YGCVAHIFAL QQQVACLQAQ LMQVKAQLAQ 120 NAMNSHNIES QWQGNLSGLP SIPTYPSYMN PISPQSSLES VEPNSADSMN MQEIQSREEF 180 SFQGYPKKRL YNSDLGELQA LALRMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-67 | LBD family protein |