PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280238.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 1290aa MW: 145398 Da PI: 6.343

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	473	505	18	55
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++f Lr+++P+ + +Ka+iL+ +++Y+k+L+ XP_021280238.1 473 EKFLVLRSMVPSiS------EIDKASILKDTIKYLKELE 505 68899*****66......8*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 1290 aa Download sequence
MANVVVNQEG VPENLRKQLA VAVRSIQWSY AIFWSLSATQ QGVLQWGGGY YNGDIKTRKT 60 VQVMELKADK IGLQRSEQLR ELYESLLEGE TDQTKRPSAA LSPEDLSDAE WYYLVCMSFV 120 FNHGQGLPGR ALANGETIWL CNAQYADSKI FSRSLLAKSA SIQTVVCFPY LGGVIELGVT 180 ELVPEDPSLL QHIKASLLDF SKPVCSEKSS SAPHNADDDR DPACVKVDRE IVDLLDLENL 240 YSPTEEIKFD QEKFNELHEN INEDFNISSP DECSNGCEQN HQMEDSFMLE DVNGVASQVQ 300 SWHFMDDDFS NGVQISINSS DCVSEAFANQ EKAAISSPKQ GSVNHSHFKE FQEGNHTKLS 360 SFDLGVDDDL HYRRTLSAIL GTSNWLIESQ GFHTCGYKSS FISWKKGEKA NFHRPRVQQN 420 IFKKILFAVP LLHAGSSLMS QKETGGKHCL GKLENDDDDE KGYLLPEKRR EEEKFLVLRS 480 MVPSISEIDK ASILKDTIKY LKELEARVEE LESCMDSVDF EARPRRNCLD AMKQASDNHE 540 NRKVENVKKS WINKRKACDI DESHETGSEQ SRVIPRDGLT SDVKVSIKEL EVIIEIRCPS 600 REFLLLDIMD AINNLHLDAH TVQSSTLEDV VIVTMKSKFR GAAIAPAGMI KQALQRVATR 660 QKLFAEITHR NRKSPTRIFV ALSRYVTLCY RNPNHDDPVD PYAEKDHVIS WTSELSKLVR 720 QGQPEEAIGL FKTMLMSNQR PNYVTILSLV KAVDTLDWEA LTMMVHGLVI KMGFESEPSV 780 LTALIGTYSI YGMGICWSLF NQIPNKDVVL RSSMVSACVK NGDYVDALEL FRRMHSLGLK 840 ANHVSIVSIL PACANLGALQ LGREIHGFII RRMICYVNSV QNSLVDMYAK CKSLQTAICV 900 FNGMLKKDLV SWRNLIRGYI ENECGIKTLD VFSKMRGLSF FAPDEFVVRD MIMAVLQSGE 960 SKIGSAFHCY ILKTGFLAFV SIATALLQMY AKFSMVASAR NVFDHISNKD VIAWNAMISA 1020 YAQSRLPFNA IDTFRQMLLM NEKPSEFSLV SLLQICSLMA SQEVSDKVGE TIHAFVAKVG 1080 YSRNVYLSSA LIDFYCRFGR VKQGKFLFDE VPTKDLICWS SMINGYVLNG YGIEALETFA 1140 NMLDCGIKPN DIIFLSVLSA CSHCGLKNEG WKWFYSMKEK YGITPKLAHY ACMVDLLSRQ 1200 GHIEQALHFV RKMPMEPDKR IWGALLAGCR VSPGPIKIVE FVVERLSTLD PQNSSHYYMI 1260 LSDLYAEEGR GEDAERLRRL VDDNAKRGKE

Sequence ? help Back to Top

Protein Sequence Length: 1290 aa Download sequence

MANVVVNQEG VPENLRKQLA VAVRSIQWSY AIFWSLSATQ QGVLQWGGGY YNGDIKTRKT  60
VQVMELKADK IGLQRSEQLR ELYESLLEGE TDQTKRPSAA LSPEDLSDAE WYYLVCMSFV  120
FNHGQGLPGR ALANGETIWL CNAQYADSKI FSRSLLAKSA SIQTVVCFPY LGGVIELGVT  180
ELVPEDPSLL QHIKASLLDF SKPVCSEKSS SAPHNADDDR DPACVKVDRE IVDLLDLENL  240
YSPTEEIKFD QEKFNELHEN INEDFNISSP DECSNGCEQN HQMEDSFMLE DVNGVASQVQ  300
SWHFMDDDFS NGVQISINSS DCVSEAFANQ EKAAISSPKQ GSVNHSHFKE FQEGNHTKLS  360
SFDLGVDDDL HYRRTLSAIL GTSNWLIESQ GFHTCGYKSS FISWKKGEKA NFHRPRVQQN  420
IFKKILFAVP LLHAGSSLMS QKETGGKHCL GKLENDDDDE KGYLLPEKRR EEEKFLVLRS  480
MVPSISEIDK ASILKDTIKY LKELEARVEE LESCMDSVDF EARPRRNCLD AMKQASDNHE  540
NRKVENVKKS WINKRKACDI DESHETGSEQ SRVIPRDGLT SDVKVSIKEL EVIIEIRCPS  600
REFLLLDIMD AINNLHLDAH TVQSSTLEDV VIVTMKSKFR GAAIAPAGMI KQALQRVATR  660
QKLFAEITHR NRKSPTRIFV ALSRYVTLCY RNPNHDDPVD PYAEKDHVIS WTSELSKLVR  720
QGQPEEAIGL FKTMLMSNQR PNYVTILSLV KAVDTLDWEA LTMMVHGLVI KMGFESEPSV  780
LTALIGTYSI YGMGICWSLF NQIPNKDVVL RSSMVSACVK NGDYVDALEL FRRMHSLGLK  840
ANHVSIVSIL PACANLGALQ LGREIHGFII RRMICYVNSV QNSLVDMYAK CKSLQTAICV  900
FNGMLKKDLV SWRNLIRGYI ENECGIKTLD VFSKMRGLSF FAPDEFVVRD MIMAVLQSGE  960
SKIGSAFHCY ILKTGFLAFV SIATALLQMY AKFSMVASAR NVFDHISNKD VIAWNAMISA  1020
YAQSRLPFNA IDTFRQMLLM NEKPSEFSLV SLLQICSLMA SQEVSDKVGE TIHAFVAKVG  1080
YSRNVYLSSA LIDFYCRFGR VKQGKFLFDE VPTKDLICWS SMINGYVLNG YGIEALETFA  1140
NMLDCGIKPN DIIFLSVLSA CSHCGLKNEG WKWFYSMKEK YGITPKLAHY ACMVDLLSRQ  1200
GHIEQALHFV RKMPMEPDKR IWGALLAGCR VSPGPIKIVE FVVERLSTLD PQNSSHYYMI  1260
LSDLYAEEGR GEDAERLRRL VDDNAKRGKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-173	bHLH family protein