PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280148.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 350aa MW: 36983.2 Da PI: 9.8107

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.8	3.4e-37	66	166	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + s+++ ++ +++ XP_021280148.1 66 APKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM-SVNGTLKIPTTSNANPEPGDPC 159 799*************************************************************99888555.2222223333333333333332 PP TCP 97 skksqks 103 +kk++++ XP_021280148.1 160 KKKRKRP 166 2222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MAAIQKQEVE EDEDARAVDL SINGGAAASK NPKEEPDTEA AIGAMPMAVH VPSAIPMPLV 60 TAPPTAPKRA STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLEHAE 120 PAIIAATGTG TVPAIAMSVN GTLKIPTTSN ANPEPGDPCK KKRKRPANSE YVDINDAVSV 180 SSGLAPVITC QRRQQQQQQP PVLPQGLVPV WAIPSNAVVP GAFFMVPPMA SVAGPSTQPH 240 IFTFPATATP LINISARPIS SFVSAMQHGV SIAATPGQLQ SNVAVTSSTL PVSKTVKTTS 300 VMAPSSSSAA TITSSSASTT TTTTTQMLRD FSLEIYDKQE LQFMTRPSKH

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MAAIQKQEVE EDEDARAVDL SINGGAAASK NPKEEPDTEA AIGAMPMAVH VPSAIPMPLV  60
TAPPTAPKRA STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLEHAE  120
PAIIAATGTG TVPAIAMSVN GTLKIPTTSN ANPEPGDPCK KKRKRPANSE YVDINDAVSV  180
SSGLAPVITC QRRQQQQQQP PVLPQGLVPV WAIPSNAVVP GAFFMVPPMA SVAGPSTQPH  240
IFTFPATATP LINISARPIS SFVSAMQHGV SIAATPGQLQ SNVAVTSSTL PVSKTVKTTS  300
VMAPSSSSAA TITSSSASTT TTTTTQMLRD FSLEIYDKQE LQFMTRPSKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-88	TCP family protein