PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279987.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 263aa    MW: 28376.3 Da    PI: 7.1766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000393115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F++   L  H  +H
  XP_021279987.1  93 YKCSVCNKAFPSYQALGGHKASH 115
                     9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MALEALNSPT TATPFSNKYE DIDNNYLETW KKGKRSKRPR SESPTTEEEY LALCLIMLAR  60
GSTNDDDHPR QLSSSSSPAA APAPAPPALK LSYKCSVCNK AFPSYQALGG HKASHRKTST  120
DAATTNGDNP SATSATSGSG RAHECSICHK TFPTGQALGG HKRCHYEGGN NNNYNNNNNK  180
CGSVSVSVSG VTLSDGGALS QSHRVDFDFD LNLPALPEFC GENKDGRFSQ IYAEQEVESP  240
LPTKKPRFLI TKEEKLESSL AQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-52C2H2 family protein