PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279775.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 423aa MW: 46392.1 Da PI: 6.5097

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88	9.1e-28	153	207	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ XP_021279775.1 153 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 207 5689***************.******************************86 PP
2	Myb_DNA-binding	39.6	1.2e-12	156	205	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg +t+ ++ s++qky+ XP_021279775.1 156 VDWTPELHRRFVQAVEQLGVDkaVPSRILELMGiDCLTRHNIASHLQKYR 205 57******************************889**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MLAVSPLRNT TNDENEGEME SFTISSEEFP DFADGNLLES IDFDDLFVSI NEGDTLPDLE 60 MDPEILADLP ANGSEGSEMN TSTEKTDEDN NQRKEEEDKV SGSGSGLGSS SSKGEEIVSK 120 REEPTAVKTP TKDANKGRKS SVQAKNNNQG KRKVKVDWTP ELHRRFVQAV EQLGVDKAVP 180 SRILELMGID CLTRHNIASH LQKYRSHRKH LLAREAEAAS WTHRRQMYGA ATPAGGGKRD 240 MNPWLAPTMG FPPMSPMHHH HFRPLHVWGH PTVDQSLMHL WPKHLAHIPS PAPPTWGTHP 300 PPPADPSYWH HHHQRVPNGL TPGTPCFPQA LAPTRFAAPP VPGIPPHHPM YKADPGIGVP 360 AGQSGPHPLI DFHPSKESID AAIEDVLSKP WLPLPLGLKP PSTDGVLGEL QRQGVPKVPP 420 SCA

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MLAVSPLRNT TNDENEGEME SFTISSEEFP DFADGNLLES IDFDDLFVSI NEGDTLPDLE  60
MDPEILADLP ANGSEGSEMN TSTEKTDEDN NQRKEEEDKV SGSGSGLGSS SSKGEEIVSK  120
REEPTAVKTP TKDANKGRKS SVQAKNNNQG KRKVKVDWTP ELHRRFVQAV EQLGVDKAVP  180
SRILELMGID CLTRHNIASH LQKYRSHRKH LLAREAEAAS WTHRRQMYGA ATPAGGGKRD  240
MNPWLAPTMG FPPMSPMHHH HFRPLHVWGH PTVDQSLMHL WPKHLAHIPS PAPPTWGTHP  300
PPPADPSYWH HHHQRVPNGL TPGTPCFPQA LAPTRFAAPP VPGIPPHHPM YKADPGIGVP  360
AGQSGPHPLI DFHPSKESID AAIEDVLSKP WLPLPLGLKP PSTDGVLGEL QRQGVPKVPP  420
SCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	2e-95	G2-like family protein