PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279306.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 347aa MW: 38986.4 Da PI: 9.1081

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	187	206	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_021279306.1 187 FACSICSKTFNRYNNMQMHM 206 78*****************9 PP
2	zf-C2H2	16	3.3e-05	271	293	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_021279306.1 271 FMCRKCGKTFAVKGDWRTHEKNC 293 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGFRSYHVED KNLCFQAPTF IEWLKPSSSP NSSSLSSSSS SSSSSSSLSS SSSSSSSSSS 60 VTKQVQFINP MTILKLPVSF QQQQQEIVQE TIQCLPLLSR LSENKPLKEE DAGMKKEINI 120 GIKEEKIEKV TVSLHIGLPN TGDPVIENKV FKGEEPIKKT FHGCSFNTES RFWIPTPAQI 180 LVGPMQFACS ICSKTFNRYN NMQMHMWGHG SEYRKGPDSL KGTQPAAMLR LPCYCCAQGC 240 KNNINHPRAK PLKDFRTLQT HYKRKHGAKP FMCRKCGKTF AVKGDWRTHE KNCGKLWYCT 300 CGSDFKHKRS LKDHIRSFGK GHSPHPSLEG FEDDKECITG SEDEFAH

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGFRSYHVED KNLCFQAPTF IEWLKPSSSP NSSSLSSSSS SSSSSSSLSS SSSSSSSSSS  60
VTKQVQFINP MTILKLPVSF QQQQQEIVQE TIQCLPLLSR LSENKPLKEE DAGMKKEINI  120
GIKEEKIEKV TVSLHIGLPN TGDPVIENKV FKGEEPIKKT FHGCSFNTES RFWIPTPAQI  180
LVGPMQFACS ICSKTFNRYN NMQMHMWGHG SEYRKGPDSL KGTQPAAMLR LPCYCCAQGC  240
KNNINHPRAK PLKDFRTLQT HYKRKHGAKP FMCRKCGKTF AVKGDWRTHE KNCGKLWYCT  300
CGSDFKHKRS LKDHIRSFGK GHSPHPSLEG FEDDKECITG SEDEFAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-118	C2H2 family protein