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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_021279181.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 279aa MW: 31124.7 Da PI: 5.3377 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 57.2 | 3.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++++v ++fdfl +iv +
XP_021279181.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLMRGAKTMNSLHLKQCVRAFNVFDFLGEIVGK 86
5789***********************************************************************999865 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 279 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YEITLMRGAK 60 TMNSLHLKQC VRAFNVFDFL GEIVGKVPDL GGSDTAGNDH SVAKRRKVVD NDDNASGDES 120 KRRRIHETSR ISSCGRGRGR GRGRGRGRGR SSRAAERETA AHCEKFEDDP DISHCQEKHT 180 LSIQRLDDRE EPDELKKNNS AGKNVEAPVG SFDLNVDLNE NRDSTISVVP ASPTTDSLPE 240 KQEEYPGWSL SEIEKMAIDP IELANLNRGI DEEDYDEEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 104 | 124 | KRRKVVDNDDNASGDESKRRR |
| 2 | 105 | 125 | KRRKVVDNDDNASGDESKRRR |
| 3 | 121 | 125 | KRRRI |
| 4 | 136 | 145 | RGRGRGRGRG |
| 5 | 136 | 146 | RGRGRGRGRGR |
| 6 | 138 | 147 | RGRGRGRGRG |
| 7 | 138 | 148 | RGRGRGRGRGR |
| 8 | 140 | 149 | RGRGRGRGRG |
| 9 | 140 | 150 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 2e-62 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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