PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021279040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23705.9 Da PI: 5.751 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.3e-43 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_021279040.1 57 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLA 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_021279040.1 152 KAQAE 156 99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MFKMEYTEAT PPPPPPTTAT TSSPQSLSPN SSNSSSPPPP PPPTTTTTST PPVVISPCAA 60 CKILRRRCAD KCVLAPYFPP TEPAKFTIAH RVFGASNIIK FLQELPESQR ADAVSSMVYE 120 ASARIRDPVY GCAGAICQLQ KQVNELQAQL AKAQAEVVNM QLQQANLVAL LCMEMAQSPQ 180 PNSHQSVDTF TSSPQSYQSN PGFLEDNNNL GSIWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-72 | LBD family protein |