PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279005.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 403aa MW: 44735.7 Da PI: 8.3106

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.4e-07	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_021279005.1 231 HYCQVCGKGFKRDANLRMHMRAH 253 68*******************99 PP
2	zf-C2H2	10.6	0.0018	326	349	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + XP_021279005.1 326 YVCKRCNsKQFSVLSDLRTHEKHC 349 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MISGAASCFP NASECLPMYP VAEDIVPSPL EAGSGPEAHS SSLLYNLSLL KDKVHQVQSL 60 VSILIAPDQA HPESTTLAIA SMGSLVQEII VTASSMIFIC QQMALGTTSA GNSNSTTDQL 120 HQQQVRVPDN NGISQQPNFS HGNCVGNIFQ ERGKGFYSSA ETITWYSDHC NNRNNNNNSR 180 RSLLVSNDDK LEIRQELPRR SEISEGSQGI SMKNYDIVEV DAADLLAKYT HYCQVCGKGF 240 KRDANLRMHM RAHGDEYKTT AALTNPMKIH HEGSATGSNC SMDLPKKYSC PQEGCRWNQK 300 HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNSKQFSVLS DLRTHEKHCG DLKWQCSCGT 360 TFSRKDKLMG HVALFVGHSP VVTPLTKPAK LELQPTSRQL DDR

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MISGAASCFP NASECLPMYP VAEDIVPSPL EAGSGPEAHS SSLLYNLSLL KDKVHQVQSL  60
VSILIAPDQA HPESTTLAIA SMGSLVQEII VTASSMIFIC QQMALGTTSA GNSNSTTDQL  120
HQQQVRVPDN NGISQQPNFS HGNCVGNIFQ ERGKGFYSSA ETITWYSDHC NNRNNNNNSR  180
RSLLVSNDDK LEIRQELPRR SEISEGSQGI SMKNYDIVEV DAADLLAKYT HYCQVCGKGF  240
KRDANLRMHM RAHGDEYKTT AALTNPMKIH HEGSATGSNC SMDLPKKYSC PQEGCRWNQK  300
HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNSKQFSVLS DLRTHEKHCG DLKWQCSCGT  360
TFSRKDKLMG HVALFVGHSP VVTPLTKPAK LELQPTSRQL DDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-103	C2H2 family protein