PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278555.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 470aa MW: 52129.2 Da PI: 8.9011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp C+k F++ L Hir H XP_021278555.1 48 HICPVCSKGFTSGKALGGHIRIH 70 68*******************99 PP
2	zf-C2H2	13.4	0.00023	127	148	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++ +L H+r+H XP_021278555.1 127 SCCICKKDFRSMKSLFGHMRNH 148 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MGDQAAQAIE NLEQESVSME TSDLTPSKSK KLFLKLKVSN TLKRCGQHIC PVCSKGFTSG 60 KALGGHIRIH MKGNKTGCHR KISKLQPKNL HRAKSKKRIS KNTLLPKAAD GAVDLPSNDH 120 EGAEKVSCCI CKKDFRSMKS LFGHMRNHPE RGWRGIRPPP SDKNSCCSSV SENDEALEVD 180 QISCATEKGL VSGSDLLKSL PKWTNTAKRC GKYISDEIPE AAYCLMKLSR GESFDLGQSS 240 IGYQKEFSST DKLMIDKCQS SGLTNKASEQ KKRSNIVLGK DMGEGKGKAR LKTESDQERT 300 PSEYKREDSY WPGEEKKMET SLTKELHCDN FIDKKSMVRE NKLKLNYADA TKIVENNRCF 360 DQFQKFPRKP DEEKGDPSTV EGRFRDKIIP SSQTPGLYPK NPSGQLFEAP LDETASPAEG 420 KHLKCKTLFP TASQAADGSQ VCPPKMLDFD LNEPYAALDG EDTGSKITSI

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MGDQAAQAIE NLEQESVSME TSDLTPSKSK KLFLKLKVSN TLKRCGQHIC PVCSKGFTSG  60
KALGGHIRIH MKGNKTGCHR KISKLQPKNL HRAKSKKRIS KNTLLPKAAD GAVDLPSNDH  120
EGAEKVSCCI CKKDFRSMKS LFGHMRNHPE RGWRGIRPPP SDKNSCCSSV SENDEALEVD  180
QISCATEKGL VSGSDLLKSL PKWTNTAKRC GKYISDEIPE AAYCLMKLSR GESFDLGQSS  240
IGYQKEFSST DKLMIDKCQS SGLTNKASEQ KKRSNIVLGK DMGEGKGKAR LKTESDQERT  300
PSEYKREDSY WPGEEKKMET SLTKELHCDN FIDKKSMVRE NKLKLNYADA TKIVENNRCF  360
DQFQKFPRKP DEEKGDPSTV EGRFRDKIIP SSQTPGLYPK NPSGQLFEAP LDETASPAEG  420
KHLKCKTLFP TASQAADGSQ VCPPKMLDFD LNEPYAALDG EDTGSKITSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	45	TLKRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	9e-23	C2H2 family protein