PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278431.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22990.3 Da    PI: 7.0643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.6e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr g++KKA ELSvLCd+e+a++ifss+g+lye+ss
  XP_021278431.1  9 KRIEDKSSRQVTFSKRRSGLIKKARELSVLCDVEIALVIFSSRGRLYEFSS 59
                    79***********************************************96 PP
2K-box40.89.6e-15761631299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++e ++   + L++ +e L   q +l   ++ + s+ +L++Le+qL+ +l++ Rs+K++l++e++ +lq+kek l+ en+ L+++++
  XP_021278431.1  76 QESEASKDVNESLRSHTELLHIVQSQLEEPNVVKQSVMDLEKLEKQLDMALSETRSRKTQLMMESVMTLQEKEKLLRAENELLEREIA 163
                     33344444445566666666666666666666678899**********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MGRRKVQMKR IEDKSSRQVT FSKRRSGLIK KARELSVLCD VEIALVIFSS RGRLYEFSSA  60
DGLTKILERY RCHYEQESEA SKDVNESLRS HTELLHIVQS QLEEPNVVKQ SVMDLEKLEK  120
QLDMALSETR SRKTQLMMES VMTLQEKEKL LRAENELLER EIAAMEKNED EGNEVVIGFS  180
NHQHLGNLRQ QPTLSLLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-48MIKC_MADS family protein