PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278297.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 456aa MW: 51339.6 Da PI: 5.2312

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.8	1.1e-21	123	219	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ d XP_021278297.1 123 KWTDNVVRLLIAVVACVGDDGMIEGvegpkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPSLMD 217 7************888888854334556667888********************************************6699999999998 PP trihelix 84 ql 85 ++ XP_021278297.1 218 SM 219 88 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MENSGLGGGF LSGPSGGLFD LESSINRQQK PQLGQPSLMP HHNMVLMSGL ENDHRSTGVM 60 EAKGCNPKGF PMSFGKGKGV SPIGAMNNGS MSEEDEPCYT EDGNGENSIG GKGKKGSPWQ 120 RMKWTDNVVR LLIAVVACVG DDGMIEGVEG PKRKSGILQK KGKWKTVSKI MISKGCHVSP 180 QQCEDKFNDL NKRYKKLNDI LGRGTSCRVV ENPSLMDSMP HLSAKAKDDV KKILSSKHLF 240 YQEMCAYHNG QRIPNCQDLD LQGCFVPIDR CLKDNNGSDE EEAEGHDDSE DDDEMDNVDD 300 NIADGDDERI GELNERKKAS AEEGHFWSQS AEQDSLKVEM AGIFQDPTRS SLEQKEWIKR 360 QILQLQEERV NLQMEAFELE KQRFKWLRYC NKKGRELERL RLENERMRLE NEQSILQLRQ 420 KELEVGFRSS DASLDPTSLG IDRLQSRDQI DLGRHQ

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MENSGLGGGF LSGPSGGLFD LESSINRQQK PQLGQPSLMP HHNMVLMSGL ENDHRSTGVM  60
EAKGCNPKGF PMSFGKGKGV SPIGAMNNGS MSEEDEPCYT EDGNGENSIG GKGKKGSPWQ  120
RMKWTDNVVR LLIAVVACVG DDGMIEGVEG PKRKSGILQK KGKWKTVSKI MISKGCHVSP  180
QQCEDKFNDL NKRYKKLNDI LGRGTSCRVV ENPSLMDSMP HLSAKAKDDV KKILSSKHLF  240
YQEMCAYHNG QRIPNCQDLD LQGCFVPIDR CLKDNNGSDE EEAEGHDDSE DDDEMDNVDD  300
NIADGDDERI GELNERKKAS AEEGHFWSQS AEQDSLKVEM AGIFQDPTRS SLEQKEWIKR  360
QILQLQEERV NLQMEAFELE KQRFKWLRYC NKKGRELERL RLENERMRLE NEQSILQLRQ  420
KELEVGFRSS DASLDPTSLG IDRLQSRDQI DLGRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-78	Trihelix family protein