PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278269.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 294aa MW: 31729.5 Da PI: 9.9928

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.3	5.7e-38	52	137	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a+k+ +++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ +s XP_021278269.1 52 APKRNSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGTSVSEQG-NSV 137 789******************************************************************99854444444444.443 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MEPKGSNHHP QEVPTFLIPP QKANMAENNK PAEIKNFQIM IASKDDNKKQ LAPKRNSNKD 60 RHKKVDGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGTGTIPA 120 SALAAAGTSV SEQGNSVPAG LHTKIEGLVS GIGSRDRNNW PMMSGNIERS HIPSGAWPSI 180 NGMASGFAQG SVQLTSASNF GSESSNNIPK YGFHGLEFPH MNMGFVSFSS LLNGSNQQVP 240 GLELGLSQDP HFGVLNSQAF SQFYQQMGQQ RGGVGSLNQQ QQLSDKDDSQ GSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-73	TCP family protein