PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278253.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 490aa MW: 53558.3 Da PI: 6.3813

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_021278253.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP
2	AP2	40.3	7.7e-13	245	295	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g XP_021278253.1 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 295 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MLDLNLNAAS TELTQDSDSA APFTDKFNEG SGNQMDESGT SNSSVVNDDD ESCSTRANGD 60 AFTLSFDILR VGSGGSEYPN DDAAMVVTKE LFPVKGVGGD FGSCEGQSSG NGNNNKWIDL 120 SFERKEAGEP RMMQQQASQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVDADINFT LSDYEEDMTQ MKNLTKEEFV HILRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDNEV EAARAYDKAA IKCNGREAVT 300 NFEPSSYEGE MTFDTSNEGN DHNLDLNLGI SPPVGKGLKE NEGHLHFHTG PYDMHGAKSL 360 RAENPCAATV GGPPIKGLVG ASDQPIFWNS GYPRFFPSEE RATVKRVELG PPQGLPDWAW 420 QTHGQVSVTP MPLFSTAASS GFSFSATPPS AAILPSRPLN PTTHSLCFAS PGATSTPQTY 480 FHIKPPQAPP

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MLDLNLNAAS TELTQDSDSA APFTDKFNEG SGNQMDESGT SNSSVVNDDD ESCSTRANGD  60
AFTLSFDILR VGSGGSEYPN DDAAMVVTKE LFPVKGVGGD FGSCEGQSSG NGNNNKWIDL  120
SFERKEAGEP RMMQQQASQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVDADINFT LSDYEEDMTQ MKNLTKEEFV HILRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDNEV EAARAYDKAA IKCNGREAVT  300
NFEPSSYEGE MTFDTSNEGN DHNLDLNLGI SPPVGKGLKE NEGHLHFHTG PYDMHGAKSL  360
RAENPCAATV GGPPIKGLVG ASDQPIFWNS GYPRFFPSEE RATVKRVELG PPQGLPDWAW  420
QTHGQVSVTP MPLFSTAASS GFSFSATPPS AAILPSRPLN PTTHSLCFAS PGATSTPQTY  480
FHIKPPQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-142	AP2 family protein