PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278052.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 716aa MW: 78654.7 Da PI: 8.7457

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	597	646	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_021278052.1 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MVLQKRLDYG FNGYQVPATP RATRSARKRV PFRKRFEDNQ ISAFDLLATV AGNLLLGKES 60 TPTSSNTSSG EDQSAVVKNA VKEERRDGDQ SLKVETCNQD RTDRKFFVSE LVPQTNDPNY 120 SSKESPSLLN DAHFGFASVI TTSDCSERYD AQKLMNGKTE SEMGSLPCKV ETGPFVCGTT 180 GDCFKPESQN KGLTYEELDR TDKISIGEVA DTCPLEDPVL LDGKPPALVS SDSSGKARSC 240 RDCNPCSSFP AKQDDVNVVS RDDDENSSGC THPSPIKKPF RPTPRIGDRR IRKILASKYW 300 KVAPRLKDVT FSNSDENVKP ACCGRNSAYK RIRSERNYPF KKRKFLHCSS VSSSDGGISN 360 EGISDSSEKS INGNASGVYS KMHGGAGESS SLADQRKSFH SMDSHVKLRI KSFRVPELFI 420 EIPESATVGS LKRTVMEAVT AILGGGLRVG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG 480 FSLEPNPSQT SPLLCPGGSP LTLPCDSPLP LARYPTTPGL ANQVVCDPSP EPHMPNLGNF 540 VESDHDSAPS PTDMSLEKST TDSKALVAVP AISVEALAVV PAHRKSKRSE VVQRRIRRPF 600 SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE 660 PVPQELLDRV LTAHAYWSQQ QAKQQLKPQQ PETCLLLYNS TMRGSSTCDV VEKTLG

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MVLQKRLDYG FNGYQVPATP RATRSARKRV PFRKRFEDNQ ISAFDLLATV AGNLLLGKES  60
TPTSSNTSSG EDQSAVVKNA VKEERRDGDQ SLKVETCNQD RTDRKFFVSE LVPQTNDPNY  120
SSKESPSLLN DAHFGFASVI TTSDCSERYD AQKLMNGKTE SEMGSLPCKV ETGPFVCGTT  180
GDCFKPESQN KGLTYEELDR TDKISIGEVA DTCPLEDPVL LDGKPPALVS SDSSGKARSC  240
RDCNPCSSFP AKQDDVNVVS RDDDENSSGC THPSPIKKPF RPTPRIGDRR IRKILASKYW  300
KVAPRLKDVT FSNSDENVKP ACCGRNSAYK RIRSERNYPF KKRKFLHCSS VSSSDGGISN  360
EGISDSSEKS INGNASGVYS KMHGGAGESS SLADQRKSFH SMDSHVKLRI KSFRVPELFI  420
EIPESATVGS LKRTVMEAVT AILGGGLRVG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG  480
FSLEPNPSQT SPLLCPGGSP LTLPCDSPLP LARYPTTPGL ANQVVCDPSP EPHMPNLGNF  540
VESDHDSAPS PTDMSLEKST TDSKALVAVP AISVEALAVV PAHRKSKRSE VVQRRIRRPF  600
SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QAKQQLKPQQ PETCLLLYNS TMRGSSTCDV VEKTLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-159	MYB_related family protein