PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278014.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 674aa MW: 73812.4 Da PI: 6.5664

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.2e-09	267	289	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++f++ GtCk+Gd C +aHg XP_021278014.1 267 GVPCPDFRK-GTCKRGDLCEYAHG 289 579****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MCGGLDQLNM KTTAPSSSLE TKTMDCLTGA VGSECSFSVL LEFAADNDVE GFQRSIRDIS 60 LVGEVGLWYG RQVEVNRSCG PDKSTALHCA ASGGSIRAVE VVKLLLLAGA DPCLTDANGH 120 RPFDVIVSPW NMPQMKVALE ELLNNGAPVC LENSHELTVS LRSSSLSLST SLDSGSSSLV 180 SNAKISLVTC KPADNNISSA PDRKEYPVDP SIPDIKSSIY GTDEFRMFSF KIRPCSRAYS 240 HDWTECPFVH PGENARRRDP RKFHYSGVPC PDFRKGTCKR GDLCEYAHGI FESWLHPAQY 300 RTRLCKDGTT CNRRVCFFAH RPEELRPLYV SSGMCIQSPQ SAASAVTTMD RAAAMNLLPG 360 SPSALCAMSM SPFSPAMSPS ADGICQSPIG WPQQHVPTLH LPGSNIQTSR LKSSFNARDM 420 PAMELNMSPN FDLHQQQHLN SLSCLSQPHL VTKSANLDGL FLTEFCSPQY PDQVTAMPML 480 SSAHKSMLLN QLHQQQRVLS PIKANIFSPK NDHPLLQSAF DASLSERFSP WHLEPLSPLN 540 SRLSAHTNLE KQFHGLSSQE LEYKLSNDFE SKGIVGSPVN SWSKWETPND KVDWSVQEDE 600 LGQFRKSCSL GHHDMEPAVS CVQSLVKESP SAMATTAASS QTLSVEGSNS LSELGDHATF 660 GARHELLKLD KIMA

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MCGGLDQLNM KTTAPSSSLE TKTMDCLTGA VGSECSFSVL LEFAADNDVE GFQRSIRDIS  60
LVGEVGLWYG RQVEVNRSCG PDKSTALHCA ASGGSIRAVE VVKLLLLAGA DPCLTDANGH  120
RPFDVIVSPW NMPQMKVALE ELLNNGAPVC LENSHELTVS LRSSSLSLST SLDSGSSSLV  180
SNAKISLVTC KPADNNISSA PDRKEYPVDP SIPDIKSSIY GTDEFRMFSF KIRPCSRAYS  240
HDWTECPFVH PGENARRRDP RKFHYSGVPC PDFRKGTCKR GDLCEYAHGI FESWLHPAQY  300
RTRLCKDGTT CNRRVCFFAH RPEELRPLYV SSGMCIQSPQ SAASAVTTMD RAAAMNLLPG  360
SPSALCAMSM SPFSPAMSPS ADGICQSPIG WPQQHVPTLH LPGSNIQTSR LKSSFNARDM  420
PAMELNMSPN FDLHQQQHLN SLSCLSQPHL VTKSANLDGL FLTEFCSPQY PDQVTAMPML  480
SSAHKSMLLN QLHQQQRVLS PIKANIFSPK NDHPLLQSAF DASLSERFSP WHLEPLSPLN  540
SRLSAHTNLE KQFHGLSSQE LEYKLSNDFE SKGIVGSPVN SWSKWETPND KVDWSVQEDE  600
LGQFRKSCSL GHHDMEPAVS CVQSLVKESP SAMATTAASS QTLSVEGSNS LSELGDHATF  660
GARHELLKLD KIMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein