PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278012.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 708aa MW: 77626.1 Da PI: 6.8473

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.5e-09	301	323	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++f++ GtCk+Gd C +aHg XP_021278012.1 301 GVPCPDFRK-GTCKRGDLCEYAHG 323 579****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MCGGLDQLNM KTTAPSSSLE TKTMDCLTGA VGSECSFSVL LEFAADNDVE GFQRSIRDIS 60 LVGEVGLWYG RRKCAKQIVV ERRTPLMIAA KYGSVDVVKF LLSLPEVEVN RSCGPDKSTA 120 LHCAASGGSI RAVEVVKLLL LAGADPCLTD ANGHRPFDVI VSPWNMPQMK VALEELLNNG 180 APVCLENSHE LTVSLRSSSL SLSTSLDSGS SSLVSNAKIS LVTCKPADNN ISSAPDRKEY 240 PVDPSIPDIK SSIYGTDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS 300 GVPCPDFRKG TCKRGDLCEY AHGIFESWLH PAQYRTRLCK DGTTCNRRVC FFAHRPEELR 360 PLYVSSGMCI QSPQSAASAV TTMDRAAAMN LLPGSPSALC AMSMSPFSPA MSPSADGICQ 420 SPIGWPQQHV PTLHLPGSNI QTSRLKSSFN ARDMPAMELN MSPNFDLHQQ QHLNSLSCLS 480 QPHLVTKSAN LDGLFLTEFC SPQYPDQVTA MPMLSSAHKS MLLNQLHQQQ RVLSPIKANI 540 FSPKNDHPLL QSAFDASLSE RFSPWHLEPL SPLNSRLSAH TNLEKQFHGL SSQELEYKLS 600 NDFESKGIVG SPVNSWSKWE TPNDKVDWSV QEDELGQFRK SCSLGHHDME PAVSCVQSLV 660 KESPSAMATT AASSQTLSVE GSNSLSELGD HATFGARHEL LKLDKIMA

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MCGGLDQLNM KTTAPSSSLE TKTMDCLTGA VGSECSFSVL LEFAADNDVE GFQRSIRDIS  60
LVGEVGLWYG RRKCAKQIVV ERRTPLMIAA KYGSVDVVKF LLSLPEVEVN RSCGPDKSTA  120
LHCAASGGSI RAVEVVKLLL LAGADPCLTD ANGHRPFDVI VSPWNMPQMK VALEELLNNG  180
APVCLENSHE LTVSLRSSSL SLSTSLDSGS SSLVSNAKIS LVTCKPADNN ISSAPDRKEY  240
PVDPSIPDIK SSIYGTDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
GVPCPDFRKG TCKRGDLCEY AHGIFESWLH PAQYRTRLCK DGTTCNRRVC FFAHRPEELR  360
PLYVSSGMCI QSPQSAASAV TTMDRAAAMN LLPGSPSALC AMSMSPFSPA MSPSADGICQ  420
SPIGWPQQHV PTLHLPGSNI QTSRLKSSFN ARDMPAMELN MSPNFDLHQQ QHLNSLSCLS  480
QPHLVTKSAN LDGLFLTEFC SPQYPDQVTA MPMLSSAHKS MLLNQLHQQQ RVLSPIKANI  540
FSPKNDHPLL QSAFDASLSE RFSPWHLEPL SPLNSRLSAH TNLEKQFHGL SSQELEYKLS  600
NDFESKGIVG SPVNSWSKWE TPNDKVDWSV QEDELGQFRK SCSLGHHDME PAVSCVQSLV  660
KESPSAMATT AASSQTLSVE GSNSLSELGD HATFGARHEL LKLDKIMA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	77	GRRKCAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein