PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276876.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 342aa    MW: 37967.2 Da    PI: 8.1301
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.6e-32185241158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  XP_021276876.1 185 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 241
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MAIRVQNLPK KNIDESSVHS LSHLSVSCPP WWNSNEQQIA QTLPQNISLK VETPSQLYHN  60
AKHLGLQLPD QESSSAQAIG QSRHEVGVIG VTNSRCNSSE SGQDESCGKD IEGQMKPVFM  120
LNNPNTVFSP SHSNYNHSMA YARNPYADAY FGGLFTPYGQ QAIIQPQMAG GAPTRIPLPL  180
DLDEDGPIYV NAKQYHGILR RRQYRAKLEA QNKLVKARKP YLHESRHLHA LNRVRGSGGR  240
FLSTKKLQQS DPTFNTSSHC ISDTSCLDQK NTRSEFESRC SHTAEYVGSS TSCSDITSVS  300
NSECNFQQPE HRFSDISPHV GSHMQNSVSM CNGIQHCASV VR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-45NF-YA family protein