PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276014.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 543aa    MW: 59848.8 Da    PI: 5.8906
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.72e-1271605241373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+ L+ cAe+v+ gdl la++l+  ++ l +       + ++a +f  AL++r+++   ++    + s  s     e+   ++ f+e++P+lkf
  XP_021276014.1 160 LVHMLMICAECVQRGDLPLASSLIDDMQRLLTRVNtvCGIGKVAGHFIDALSRRVFQ---GIGG-GSISGGS---AYENEILYHHFYEACPYLKF 247
                     689**************************9555441269*****************9...3332.2333333...5666678899********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled
  XP_021276014.1 248 AHFTANQAILEAFDGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAATRLED 342
                     ****************************************************************************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+Ea+aVn+++qlhrll ++ + +s++++vL+ ++sl+Pk+++vveqea+hn++ Fl+rf+eal+yys++fdslea    + + ++
  XP_021276014.1 343 VKPWMLQVNPKEAVAVNSIMQLHRLLGSDPTRNSPIETVLSWIRSLNPKIMTVVEQEANHNQPGFLDRFTEALYYYSTMFDSLEAC---TVQPAK 434
                     ***********************************************************************************998...678888 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      + + +++rei nvv+ceg++r+erhe l+kWr rl+ aGF+p++l+++a kqa++ll  ++ +gy vee++g+l+lgW++rpL+++SaW
  XP_021276014.1 435 ALAEIYIQREIANVVSCEGSARVERHEPLAKWRTRLNGAGFRPLHLGSNAFKQASMLLTLFSAEGYLVEENEGCLTLGWHSRPLIAASAW 524
                     999999************************************************************************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    
MVLYDSATSA ASSSGSSSSS SYKQPQQQQQ QDIDGLLAGA GYKVRSSELR QVAQRLERLE  60
IAMVNSPADF SYLASDAIHY NPSDLASWVD SLLSEFTQPP TCPAEFIMDP VTNQAVVNNA  120
WTSTEPHTPQ VHQNISFERQ SLNHQLTVVT AMEEDSGIRL VHMLMICAEC VQRGDLPLAS  180
SLIDDMQRLL TRVNTVCGIG KVAGHFIDAL SRRVFQGIGG GSISGGSAYE NEILYHHFYE  240
ACPYLKFAHF TANQAILEAF DGHDCVHVVD FNLMHGLQWP ALIQALALRP GGPPLLRLTG  300
IGPPSPDGRD SLREIGLRLA ELARSVNVRF AFRGVAATRL EDVKPWMLQV NPKEAVAVNS  360
IMQLHRLLGS DPTRNSPIET VLSWIRSLNP KIMTVVEQEA NHNQPGFLDR FTEALYYYST  420
MFDSLEACTV QPAKALAEIY IQREIANVVS CEGSARVERH EPLAKWRTRL NGAGFRPLHL  480
GSNAFKQASM LLTLFSAEGY LVEENEGCLT LGWHSRPLIA ASAWHAVSDA AAEMPAWDNH  540
QPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-143GRAS family protein