PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021275474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | ARF | ||||||||
Protein Properties | Length: 1115aa MW: 123393 Da PI: 6.7708 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.7 | 2e-22 | 137 | 238 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_021275474.1 137 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 228 99*****************************9445444.38************************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_021275474.1 229 QQLLLGIRRA 238 889****997 PP | |||||||
2 | Auxin_resp | 121.5 | 6.5e-40 | 263 | 346 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++gvsdldpvrW+nS+Wr+L+ XP_021275474.1 263 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYnNQISPGMRFRMMFETEESGTRRYMGTITGVSDLDPVRWKNSQWRNLQ 346 79********************************98799*******************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence |
MKMPANGAGA AANVAAASTA EVGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS 60 EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVSAFDKEAL 120 LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRSAE KIFPPLDFSM QPPAQELVAR 180 DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR 240 QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN 300 QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR 360 VSIWEIEPVT APFFICPPPF FRSKRPRQPG VPDDESSDLD NLFKRSMPWL GDDICMKESQ 420 APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLP APQMPQPNNL 480 QFNTQRLQQQ VQQLDQLPKL PSTMNPLGSI MQPQQHSDMT QQSRQNLIAQ TLPSSQVQAQ 540 VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLPQQQQQ QQHQHLMGPN QQQNVMQSQL 600 PDPVNQHLQI SDNQIQFQLF QKLQQQQQSL LAQQSALQQP AQLVQTQEQQ RQVLDASQSF 660 SRSVTTSQVL ELPPMTPTLP PQSNVIPQQT SKNSSHANVR FDQPPLQSKL QQQQPGMLPE 720 IPGHVGHSSA PTANHLSTAV SSVMTGAAVA AQSVVTDDNP SCTTSPSTNC PNVLQPMINS 780 RVHRSTGLGD DMAQSAATVL NPHALETMSS NANLIKELHQ KSDVKPSFNI SKSQNQGLFA 840 SQTYINGATA QADYLDTSSS TTSVCLSHND VHLQQNNSLT YNPQTLLLRD TSQDGEVQAD 900 PRNNVSYGTN MDGQIGMPMN SDSLLTKGMM GLGKDFSNNL SSGGMLTSYE NPKDAQQELS 960 SSMVSQSFGV PDMTFNSIDS TINDSSFINR GAWAPPPQFQ RMRTYTKVYK RGAVGRSIDI 1020 TRYSGYDELK QDLARRFGIE GQLEDRGRIG WKLVYVDHEK DVLLVGDDPW EEFVNCVRCI 1080 KILSPQEVQQ MSLDGDFGNS VLPNQACSSS DNGNT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |